Uses of Enum Class
org.snpeff.snpEffect.ErrorWarningType
Packages that use ErrorWarningType
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Uses of ErrorWarningType in org.snpeff.interval
Methods in org.snpeff.interval that return ErrorWarningTypeModifier and TypeMethodDescriptionExon.sanityCheck(Variant variant) Check that the base in the exon corresponds with the one in the SNPTranscript.sanityCheck(Variant variant) Perfom some baseic chekcs, return error type, if any -
Uses of ErrorWarningType in org.snpeff.snpEffect
Methods in org.snpeff.snpEffect that return ErrorWarningTypeModifier and TypeMethodDescriptionstatic ErrorWarningTypeReturns the enum constant of this class with the specified name.static ErrorWarningType[]ErrorWarningType.values()Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.snpeff.snpEffect with parameters of type ErrorWarningTypeModifier and TypeMethodDescriptionvoidVariantEffect.addErrorMessage(ErrorWarningType errmsg) voidVariantEffects.addErrorWarning(Variant variant, ErrorWarningType errwarn) voidVariantEffect.addErrorWarningInfo(ErrorWarningType errwarn) Add an error or warningvoidVariantEffect.addInfoMessage(ErrorWarningType infomsg) voidVariantEffect.addWarningMessge(ErrorWarningType warnmsg) -
Uses of ErrorWarningType in org.snpeff.util
Fields in org.snpeff.util with type parameters of type ErrorWarningTypeMethods in org.snpeff.util that return types with arguments of type ErrorWarningTypeMethods in org.snpeff.util with parameters of type ErrorWarningTypeModifier and TypeMethodDescriptionstatic voidLog.silenceWarning(ErrorWarningType warningType) static voidLog.warning(ErrorWarningType warnType, String msg) Show a warning message (up to MAX_ERRORS times)