Package org.snpeff.gsa
Class PvaluesList
java.lang.Object
org.snpeff.gsa.ScoreList
org.snpeff.gsa.PvaluesList
A list of pvalues (i.e. values in the range [0, 1])
- Author:
- pcingola
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Nested Class Summary
Nested classes/interfaces inherited from class org.snpeff.gsa.ScoreList
ScoreList.ScoreSummary -
Field Summary
Fields inherited from class org.snpeff.gsa.ScoreList
SIGNIFICANCE_LEVEL_95 -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoidadd(double score) Add a p-value to the listprotected doubleMethods inherited from class org.snpeff.gsa.ScoreList
avg, avgLargestTop, avgSmallestTop, cdf, cdfUpper, chiSquareCDFComplementary, getGeneId, getScore, max, min, pValueBonferroni, pValueFdr, pValueFisherChi2, pValueSimes, pValueZScore, quantile, score, setGeneId, size, sum, toString
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Constructor Details
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PvaluesList
public PvaluesList()
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Method Details
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add
public void add(double score) Add a p-value to the list -
getDefaultValue
protected double getDefaultValue()- Overrides:
getDefaultValuein classScoreList
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