VariantEffectFilter (SnpEff 5.2 API)

java.lang.Object

org.snpeff.filter.VariantEffectFilter

All Implemented Interfaces:: Filter<VariantEffect>

public class VariantEffectFilter extends Object implements Filter<VariantEffect>

A Generic ChangeEffect filter

Author:: pcingola

Constructor Summary

Constructors

Constructor

Description

VariantEffectFilter()
Method Summary

Modifier and Type

Method

Description

void

add(EffectType effType)

boolean

anythingSet()

Is any of the options set?

boolean

filter(VariantEffect variantEffect)

Filter a sequence change

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- VariantEffectFilter
  
  public VariantEffectFilter()
Method Details
- add
  
  public void add(EffectType effType)
- anythingSet
  
  public boolean anythingSet()
  
  Is any of the options set?
  
  Specified by:
  
  anythingSet in interface Filter<VariantEffect>
  
  Returns:
- filter
  
  public boolean filter(VariantEffect variantEffect)
  
  Filter a sequence change
  
  Specified by:
  
  filter in interface Filter<VariantEffect>
  
  Returns:
  
  true if it passes the filter