Package org.snpeff.fileIterator

Class RegulationGffFileIterator

java.lang.Object
org.snpeff.fileIterator.FileIterator<M>
org.snpeff.fileIterator.MarkerFileIterator<Regulation>
org.snpeff.fileIterator.RegulationFileIterator
org.snpeff.fileIterator.RegulationGffFileIterator
All Implemented Interfaces:
Iterable<Regulation>, Iterator<Regulation>
public class RegulationGffFileIterator extends RegulationFileIterator
Opens a GFF3 file and create regulatory elements. Example of regulatory GFF file: ftp://ftp.ensembl.org/pub/release-63/regulation/homo_sapiens/AnnotatedFeatures.gff.gz References (GFF3) : http://www.sequenceontology.org/gff3.shtml
Author:
pcingola

  • Field Details

  • Constructor Details

    • RegulationGffFileIterator

      public RegulationGffFileIterator(String fileName)

    • RegulationGffFileIterator

      public RegulationGffFileIterator(String fileName, Genome genome)

  • Method Details