skbio.tree.TreeNode.from_linkage_matrix¶

classmethod TreeNode.from_linkage_matrix(linkage_matrix, id_list)[source]¶

Return tree from SciPy linkage matrix.

State: Experimental as of 0.4.0.

Parameters:

Parameters:	linkage_matrix : ndarray A SciPy linkage matrix as returned by scipy.cluster.hierarchy.linkage id_list : list The indices of the id_list will be used in the linkage_matrix
Returns:	TreeNode An unrooted bifurcated tree

linkage_matrix : ndarray

A SciPy linkage matrix as returned by scipy.cluster.hierarchy.linkage

id_list : list

The indices of the id_list will be used in the linkage_matrix

Returns:

TreeNode

An unrooted bifurcated tree