Package com.pixelmed.convert
Class Immunostaining
java.lang.Object
com.pixelmed.convert.Immunostaining
A class for encoding channel parameters describing immunostaining (including antibodies, fluorescence).
Development of this class has been funded in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Task Order No. HHSN26110071 under Contract No. HHSN261201500003l (Imaging Data Commons).
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Nested Class Summary
Nested Classes -
Constructor Summary
ConstructorsConstructorDescriptionImmunostaining(File file) Immunostaining(SortedMap<String, String> channelNamesByChannelID) -
Method Summary
Modifier and TypeMethodDescriptionstatic CodedSequenceItemgetCodedFluorophore(String name) static CodedSequenceItemgetCodedTarget(String name) static CodedSequenceItemgetCodedUsingSubstance(String name) static CodedSequenceItemgetCodeForChannelInMap(Map<String, CodedSequenceItem> map, String name) static voidRead a tab or comma separated values file containing channel parameters describing immunostaining (including antibodies, fluorescence).
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Constructor Details
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Immunostaining
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Immunostaining
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Method Details
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getCodeForChannelInMap
public static CodedSequenceItem getCodeForChannelInMap(Map<String, CodedSequenceItem> map, String name) -
getCodedTarget
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getCodedUsingSubstance
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getCodedFluorophore
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getMapOfOpticalPathAttributesByChannelID
public SortedMap<String,AttributeList> getMapOfOpticalPathAttributesByChannelID() throws DicomException- Throws:
DicomException
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getMapOfSpecimenPreparationStepContentItemSequenceByChannelID
public SortedMap<String,SequenceAttribute> getMapOfSpecimenPreparationStepContentItemSequenceByChannelID() throws DicomException- Throws:
DicomException
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main
Read a tab or comma separated values file containing channel parameters describing immunostaining (including antibodies, fluorescence).
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