java.lang.Object

com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom

public class ConvertAmicasJPEG2000FilesetToDicom extends Object

This class provides conversion of a set of Amicas JPEG 2000 files to DICOM.

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

final class

ConvertAmicasJPEG2000FilesetToDicom.OnlyDirectoriesFileFilter

Instances of this class select only Files that are directories.

final class

ConvertAmicasJPEG2000FilesetToDicom.OnlySuffixFilenameFilter

Instances of this class select only File names that end with the specified suffix.
Field Summary

Fields

Modifier and Type

Field

Description

protected String

mediaDirectoryPath

protected ConvertAmicasJPEG2000FilesetToDicom.OnlyDirectoriesFileFilter

onlyDirectoriesFileFilter

protected ConvertAmicasJPEG2000FilesetToDicom.OnlySuffixFilenameFilter

onlyXMLFilenameFilter

protected PrintWriter

pwlogger

protected SpecificCharacterSet

specificCharacterSet

protected static UIDGenerator

uidGenerator
Constructor Summary

Constructors

Constructor

Description

ConvertAmicasJPEG2000FilesetToDicom()

Construct an converter that will looked for files in the system default path.

ConvertAmicasJPEG2000FilesetToDicom(String mediaDirectoryPath)

Construct an converter that will looked for files in the specified path.
Method Summary

Modifier and Type

Method

Description

protected void

addDicomAttributeFromXmlAttribute(AttributeList list, AttributeTag tag, String xmlAttributeName, NamedNodeMap xmlAttributes, int type, String defaultValueForType1)

void

choosePathsAndConvertAmicasFiles()

Pop up folder chooser dialogs that allow the user to specify the location of the amicas-patients folder, or the parent folder (for example, the drive or volume) in which the amicas-patients folder is located, and the output folder to store the converted DICOM files, and then perform the conversion.

void

convertAmicasFiles(String pathName, String dicomOutputFolder)

Read an amicas-patients folder, and then convert any image files within.

protected void

createDicomImageFileFromAmicasImageFile(File amicasFolder, String amicasFileName, String dicomOutputFolder, String storingAETitle, AttributeList patientList, AttributeList studyList, AttributeList seriesList, AttributeList imageList)

protected String

getNamedAttributeValue(NamedNodeMap xmlAttributes, String xmlAttributeName)

static void

main(String[] arg)

Convert a set of Amicas JPEG 2000 files to DICOM.

protected AttributeList

makeAttributeListForImage(NamedNodeMap xmlAttributes)

protected AttributeList

makeAttributeListForPatient(NamedNodeMap xmlAttributes)

protected AttributeList

makeAttributeListForSeries(NamedNodeMap xmlAttributes)

protected AttributeList

makeAttributeListForStudy(NamedNodeMap xmlAttributes)

protected Attribute

makeDicomAttributeFromXmlAttribute(AttributeTag tag, String xmlAttributeName, NamedNodeMap xmlAttributes, int type, String defaultValue)

protected Attribute

newAttribute(AttributeTag tag)

void

setLogger(OutputStream stream)

void

setLogger(PrintWriter pwlogger)

void

setLogger(JFrame content, int width, int height)

protected static SpecificCharacterSet

setSpecificCharacterSetFromDocumentEncoding(Document document)

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- mediaDirectoryPath
  
  protected String mediaDirectoryPath
- pwlogger
  
  protected PrintWriter pwlogger
- onlyDirectoriesFileFilter
  
  protected ConvertAmicasJPEG2000FilesetToDicom.OnlyDirectoriesFileFilter onlyDirectoriesFileFilter
- onlyXMLFilenameFilter
  
  protected ConvertAmicasJPEG2000FilesetToDicom.OnlySuffixFilenameFilter onlyXMLFilenameFilter
- specificCharacterSet
  
  protected SpecificCharacterSet specificCharacterSet
- uidGenerator
  
  protected static UIDGenerator uidGenerator
Constructor Details
- ConvertAmicasJPEG2000FilesetToDicom
  
  public ConvertAmicasJPEG2000FilesetToDicom()
  
  Construct an converter that will looked for files in the system default path.
- ConvertAmicasJPEG2000FilesetToDicom
  
  public ConvertAmicasJPEG2000FilesetToDicom(String mediaDirectoryPath)
  
  Construct an converter that will looked for files in the specified path.
  
  Parameters:
  
  mediaDirectoryPath - where to begin looking for the amicas-patients folder
Method Details
- setLogger
  
  public void setLogger(PrintWriter pwlogger)
- setLogger
  
  public void setLogger(OutputStream stream)
- setLogger
  
  public void setLogger(JFrame content, int width, int height)
- choosePathsAndConvertAmicasFiles
  
  public void choosePathsAndConvertAmicasFiles() throws IOException, DicomException, ParserConfigurationException, SAXException
  
  Pop up folder chooser dialogs that allow the user to specify the location of the amicas-patients folder, or the parent folder (for example, the drive or volume) in which the amicas-patients folder is located, and the output folder to store the converted DICOM files, and then perform the conversion.
  
  Throws:
  
  IOException
  
  DicomException
  
  ParserConfigurationException
  
  SAXException
- newAttribute
  
  protected Attribute newAttribute(AttributeTag tag) throws DicomException
  
  Throws:
  
  DicomException
- getNamedAttributeValue
  
  protected String getNamedAttributeValue(NamedNodeMap xmlAttributes, String xmlAttributeName)
- makeDicomAttributeFromXmlAttribute
  
  protected Attribute makeDicomAttributeFromXmlAttribute(AttributeTag tag, String xmlAttributeName, NamedNodeMap xmlAttributes, int type, String defaultValue) throws DicomException
  
  Throws:
  
  DicomException
- addDicomAttributeFromXmlAttribute
  
  protected void addDicomAttributeFromXmlAttribute(AttributeList list, AttributeTag tag, String xmlAttributeName, NamedNodeMap xmlAttributes, int type, String defaultValueForType1) throws DicomException
  
  Throws:
  
  DicomException
- makeAttributeListForPatient
  
  protected AttributeList makeAttributeListForPatient(NamedNodeMap xmlAttributes) throws DicomException
  
  Throws:
  
  DicomException
- makeAttributeListForStudy
  
  protected AttributeList makeAttributeListForStudy(NamedNodeMap xmlAttributes) throws DicomException
  
  Throws:
  
  DicomException
- makeAttributeListForSeries
  
  protected AttributeList makeAttributeListForSeries(NamedNodeMap xmlAttributes) throws DicomException
  
  Throws:
  
  DicomException
- makeAttributeListForImage
  
  protected AttributeList makeAttributeListForImage(NamedNodeMap xmlAttributes) throws DicomException
  
  Throws:
  
  DicomException
- setSpecificCharacterSetFromDocumentEncoding
  
  protected static SpecificCharacterSet setSpecificCharacterSetFromDocumentEncoding(Document document)
- createDicomImageFileFromAmicasImageFile
  
  protected void createDicomImageFileFromAmicasImageFile(File amicasFolder, String amicasFileName, String dicomOutputFolder, String storingAETitle, AttributeList patientList, AttributeList studyList, AttributeList seriesList, AttributeList imageList) throws IOException, DicomException
  
  Throws:
  
  IOException
  
  DicomException
- convertAmicasFiles
  
  public void convertAmicasFiles(String pathName, String dicomOutputFolder) throws IOException, DicomException, ParserConfigurationException, SAXException
  
  Read an amicas-patients folder, and then convert any image files within.
  
  Parameters:
  
  pathName - the path name to an amicas-patients folder or folder containing an amicas-patients folder
  
  dicomOutputFolder - the path name to where to write the DICOM files
  
  Throws:
  
  IOException
  
  DicomException
  
  ParserConfigurationException
  
  SAXException
- main
  
  public static void main(String[] arg)
  
  Convert a set of Amicas JPEG 2000 files to DICOM.
  
  Parameters:
  
  arg - array of two strings - the path to the media or folder containing the files to convert, and the path to the folder to stored the converted images, or else will pop up file chooser dialogs to select these and create a frame to show the progress.

Class ConvertAmicasJPEG2000FilesetToDicom

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Details

mediaDirectoryPath

pwlogger

onlyDirectoriesFileFilter

onlyXMLFilenameFilter

specificCharacterSet

uidGenerator

Constructor Details

ConvertAmicasJPEG2000FilesetToDicom

ConvertAmicasJPEG2000FilesetToDicom

Method Details

setLogger

setLogger

setLogger

choosePathsAndConvertAmicasFiles

newAttribute

getNamedAttributeValue

makeDicomAttributeFromXmlAttribute

addDicomAttributeFromXmlAttribute

makeAttributeListForPatient

makeAttributeListForStudy

makeAttributeListForSeries

makeAttributeListForImage

setSpecificCharacterSetFromDocumentEncoding

createDicomImageFileFromAmicasImageFile

convertAmicasFiles

main