ShrinkSegmentationToBoundingBox

java.lang.Object

com.pixelmed.apps.ShrinkSegmentationToBoundingBox

public class ShrinkSegmentationToBoundingBox extends Object

A class of static methods to read DICOM segmentation images, and shrink their extent to the minimum bounding box surrounding the segments.

Constructor Summary

Constructors

Constructor

Description

ShrinkSegmentationToBoundingBox(String inputFileName, String outputFileName)

Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.
Method Summary

Modifier and Type

Method

Description

protected void

addTLHCOfClippedRegionToImagePosition(AttributeList list, int[] box)

protected void

clipAllFramesToSpecifiedSize(AttributeList list, int[] box)

protected int[]

compute2DInPlaneBoundingBoxForSegments(AttributeList list)

protected static int

getBit(byte[] pixelData, int f, int r, int c, int rows, int columns)

static void

main(String[] arg)

Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.

protected static void

setBit(byte[] pixelData, int f, int r, int c, int rows, int columns)

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- ShrinkSegmentationToBoundingBox
  
  public ShrinkSegmentationToBoundingBox(String inputFileName, String outputFileName) throws DicomException, FileNotFoundException, IOException
  
  Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.
  
  Parameters:
  
  inputFileName - the input file name
  
  outputFileName - the output file name
  
  Throws:
  
  DicomException
  
  FileNotFoundException
  
  IOException
Method Details
- addTLHCOfClippedRegionToImagePosition
  
  protected void addTLHCOfClippedRegionToImagePosition(AttributeList list, int[] box) throws DicomException
  
  Throws:
  
  DicomException
- compute2DInPlaneBoundingBoxForSegments
  
  protected int[] compute2DInPlaneBoundingBoxForSegments(AttributeList list) throws DicomException
  
  Throws:
  
  DicomException
- setBit
  
  protected static void setBit(byte[] pixelData, int f, int r, int c, int rows, int columns)
- getBit
  
  protected static int getBit(byte[] pixelData, int f, int r, int c, int rows, int columns)
- clipAllFramesToSpecifiedSize
  
  protected void clipAllFramesToSpecifiedSize(AttributeList list, int[] box) throws DicomException
  
  Throws:
  
  DicomException
- main
  
  public static void main(String[] arg)
  
  Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.
  
  Parameters:
  
  arg - two parameters, the inputFile, outputFile