com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry

public class DoseReporterWithLegacyOCRAndAutoSendToRegistry extends Object

A class to wait for incoming dose screen images and SRs and send them to pre-configured registry.

The class has no public methods other than the constructor and a main method that is useful as a utility.

External (unsecure) SQL access to the database is possible if the Application.DatabaseServerName property is specified; further details are described in com.pixelmed.database.DatabaseInformationModel; for example:

% java -cp lib/additional/hsqldb.jar org.hsqldb.util.DatabaseManagerSwing --url "jdbc:hsqldb:hsql://localhost/testserverdb"

For how to configure the necessary properties file, see:

See Also:

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

protected class

DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile

protected class

DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurPatientStudySeriesInstanceModel

protected class

DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurReceivedObjectHandler

protected class

DoseReporterWithLegacyOCRAndAutoSendToRegistry.ReceivedFileProcessor

protected class

DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchDatabaseAndSendToRegistry

protected class

DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchRemoteAEsForNewDoseInformation
Field Summary

Fields

Modifier and Type

Field

Description

protected String

buildDate

protected DatabaseInformationModel

databaseInformationModel

protected static int

daysBackwardsFromTodayToQuery

protected String

defaultDaysBackwardsFromTodayToQuery

protected String

defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static String

defaultPropertiesFileName

protected String

defaultRetainDeidentifiedFiles

protected String

defaultRetainGeneratedRDSRFiles

protected String

defaultRetainSourceFilesUsedForSRGeneration

protected String

defaultSleepTimeBetweenPassesToProcessReceivedFiles

protected String

defaultSleepTimeBetweenPassesToQueryRemoteAEs

protected String

imageTypeColumnName

protected String

instanceCreatorUIDColumnName

protected String

instanceHasBeenSentToRegistryColumnName

protected String

instanceIsExposureDoseSequenceColumnName

protected String

instanceIsRadiationDoseScreenColumnName

protected String

instanceIsRadiationDoseSRColumnName

protected String

instanceLocalFileNameColumnName

protected String

instanceLocalFileReferenceTypeColumnName

protected String

instanceLocalParentReferenceColumnName

protected String

instanceLocalPrimaryKeyColumnName

protected static int

intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected String

manufacturerColumnName

protected static final long

millisecondsPerDay

protected NetworkApplicationInformationFederated

networkApplicationInformation

protected NetworkApplicationProperties

networkApplicationProperties

protected String

ourCalledAETitle

protected Properties

properties

protected static String

propertyDelimitersForTokenizer_RemoteAEsForQuery

protected static String

propertyName_DaysBackwardsFromTodayToQuery

protected static String

propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static String

propertyName_RemoteAEsForQuery

protected static String

propertyName_RetainDeidentifiedFiles

protected static String

propertyName_RetainGeneratedRDSRFiles

protected static String

propertyName_RetainSourceFilesUsedForSRGeneration

protected static String

propertyName_SelectedDoseRegistry

protected static String

propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

protected static String

propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

protected List<String>

remoteAEsForQuery

protected FTPRemoteHost

remoteHost

protected boolean

retainDeidentifiedFiles

protected boolean

retainGeneratedRDSRFiles

protected boolean

retainSourceFilesUsedForSRGeneration

protected File

savedImagesFolder

protected static int

sleepTimeBetweenPassesToProcessReceivedFiles

protected static int

sleepTimeBetweenPassesToQueryRemoteAEs

protected String

sopClassUIDColumnName

protected String

sourceApplicationEntityTitleColumnName

protected StoredFilePathStrategy

storedFilePathStrategy

protected String

studyHasBeenProcessedColumnName

protected String

studyInstanceUIDColumnName
Constructor Summary

Constructors

Constructor

Description

DoseReporterWithLegacyOCRAndAutoSendToRegistry(String propertiesFileName)

Wait for incoming dose screen images and SRs and send to registry.
Method Summary

Modifier and Type

Method

Description

protected boolean

alreadyHaveIt(AttributeList uniqueKeys)

protected String

deidentifyFile(String dicomFileName)

protected void

deleteFilesAndDatabaseRecords(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)

protected void

deleteFilesAndSetDatabaseRecordsToReferenced(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)

protected long

findCandidateFilesToSendToRegistry(InformationEntity ie, String localPrimaryKeyValue, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles, long mostRecentInsertionTime)

protected boolean

findSuitableSRFilesAndSendThemToRegistry(String studyLocalPrimaryKeyValue)

protected String

getBuildDate()

Get the date the package was built.

protected void

loadProperties(String propertiesFileName)

Load properties.

static void

main(String[] arg)

Wait for incoming dose screen images and SRs and send to registry.

protected void

makeSRFileAndSendFileToRegistry(CTDose ctDose)

protected void

sendFilesToRegistry(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles)

protected void

sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile)

protected void

sendFileToRegistry(String fileName)

protected void

setSelectedDatabaseRecordHasBeenSentToRegistry(String filename)

protected void

setSelectedDatabaseRecordIsExposureDoseSequence(String filename)

protected void

setSelectedDatabaseRecordIsRadiationDoseScreen(String filename)

protected void

setSelectedDatabaseRecordIsRadiationDoseSR(String filename)

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- defaultPropertiesFileName
  
  protected static String defaultPropertiesFileName
- propertyName_SelectedDoseRegistry
  
  protected static String propertyName_SelectedDoseRegistry
- propertyName_SleepTimeBetweenPassesToProcessReceivedFiles
  
  protected static String propertyName_SleepTimeBetweenPassesToProcessReceivedFiles
- propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
  
  protected static String propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
- propertyName_SleepTimeBetweenPassesToQueryRemoteAEs
  
  protected static String propertyName_SleepTimeBetweenPassesToQueryRemoteAEs
- propertyName_DaysBackwardsFromTodayToQuery
  
  protected static String propertyName_DaysBackwardsFromTodayToQuery
- propertyName_RetainSourceFilesUsedForSRGeneration
  
  protected static String propertyName_RetainSourceFilesUsedForSRGeneration
- propertyName_RetainGeneratedRDSRFiles
  
  protected static String propertyName_RetainGeneratedRDSRFiles
- propertyName_RetainDeidentifiedFiles
  
  protected static String propertyName_RetainDeidentifiedFiles
- propertyName_RemoteAEsForQuery
  
  protected static String propertyName_RemoteAEsForQuery
- propertyDelimitersForTokenizer_RemoteAEsForQuery
  
  protected static String propertyDelimitersForTokenizer_RemoteAEsForQuery
- retainDeidentifiedFiles
  
  protected boolean retainDeidentifiedFiles
- retainGeneratedRDSRFiles
  
  protected boolean retainGeneratedRDSRFiles
- retainSourceFilesUsedForSRGeneration
  
  protected boolean retainSourceFilesUsedForSRGeneration
- defaultRetainDeidentifiedFiles
  
  protected String defaultRetainDeidentifiedFiles
- defaultRetainGeneratedRDSRFiles
  
  protected String defaultRetainGeneratedRDSRFiles
- defaultRetainSourceFilesUsedForSRGeneration
  
  protected String defaultRetainSourceFilesUsedForSRGeneration
- defaultSleepTimeBetweenPassesToProcessReceivedFiles
  
  protected String defaultSleepTimeBetweenPassesToProcessReceivedFiles
- defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
  
  protected String defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
- defaultSleepTimeBetweenPassesToQueryRemoteAEs
  
  protected String defaultSleepTimeBetweenPassesToQueryRemoteAEs
- defaultDaysBackwardsFromTodayToQuery
  
  protected String defaultDaysBackwardsFromTodayToQuery
- sleepTimeBetweenPassesToProcessReceivedFiles
  
  protected static int sleepTimeBetweenPassesToProcessReceivedFiles
- intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
  
  protected static int intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
- sleepTimeBetweenPassesToQueryRemoteAEs
  
  protected static int sleepTimeBetweenPassesToQueryRemoteAEs
- daysBackwardsFromTodayToQuery
  
  protected static int daysBackwardsFromTodayToQuery
- millisecondsPerDay
  
  protected static final long millisecondsPerDay
  See Also:
  
  Constant Field Values
- properties
  
  protected Properties properties
- networkApplicationProperties
  
  protected NetworkApplicationProperties networkApplicationProperties
- networkApplicationInformation
  
  protected NetworkApplicationInformationFederated networkApplicationInformation
- ourCalledAETitle
  
  protected String ourCalledAETitle
- remoteAEsForQuery
  
  protected List<String> remoteAEsForQuery
- databaseInformationModel
  
  protected DatabaseInformationModel databaseInformationModel
- remoteHost
  
  protected FTPRemoteHost remoteHost
- buildDate
  
  protected String buildDate
- savedImagesFolder
  
  protected File savedImagesFolder
- storedFilePathStrategy
  
  protected StoredFilePathStrategy storedFilePathStrategy
- studyHasBeenProcessedColumnName
  
  protected String studyHasBeenProcessedColumnName
- instanceHasBeenSentToRegistryColumnName
  
  protected String instanceHasBeenSentToRegistryColumnName
- instanceIsRadiationDoseSRColumnName
  
  protected String instanceIsRadiationDoseSRColumnName
- instanceIsRadiationDoseScreenColumnName
  
  protected String instanceIsRadiationDoseScreenColumnName
- instanceIsExposureDoseSequenceColumnName
  
  protected String instanceIsExposureDoseSequenceColumnName
- studyInstanceUIDColumnName
  
  protected String studyInstanceUIDColumnName
- sopClassUIDColumnName
  
  protected String sopClassUIDColumnName
- manufacturerColumnName
  
  protected String manufacturerColumnName
- imageTypeColumnName
  
  protected String imageTypeColumnName
- instanceCreatorUIDColumnName
  
  protected String instanceCreatorUIDColumnName
- sourceApplicationEntityTitleColumnName
  
  protected String sourceApplicationEntityTitleColumnName
- instanceLocalParentReferenceColumnName
  
  protected String instanceLocalParentReferenceColumnName
- instanceLocalFileNameColumnName
  
  protected String instanceLocalFileNameColumnName
- instanceLocalFileReferenceTypeColumnName
  
  protected String instanceLocalFileReferenceTypeColumnName
- instanceLocalPrimaryKeyColumnName
  
  protected String instanceLocalPrimaryKeyColumnName
Constructor Details
- DoseReporterWithLegacyOCRAndAutoSendToRegistry
  
  public DoseReporterWithLegacyOCRAndAutoSendToRegistry(String propertiesFileName) throws DicomException, DicomNetworkException, IOException, InterruptedException, FTPException
  
  Wait for incoming dose screen images and SRs and send to registry.
  
  Parameters:
  
  propertiesFileName -
  
  Throws:
  
  DicomException
  
  DicomNetworkException
  
  IOException
  
  InterruptedException
  
  FTPException
Method Details
- getBuildDate
  
  protected String getBuildDate()
  
  Get the date the package was built.
  
  Returns:
  
  the build date
- loadProperties
  
  protected void loadProperties(String propertiesFileName) throws IOException
  
  Load properties.
  
  Throws:
  
  IOException - thrown if properties file is missing
- deidentifyFile
  
  protected String deidentifyFile(String dicomFileName) throws DicomException, IOException
  
  Throws:
  
  DicomException
  
  IOException
- sendFileToRegistry
  
  protected void sendFileToRegistry(String fileName) throws DicomException, IOException, NoSuchAlgorithmException, Exception
  
  Throws:
  
  DicomException
  
  IOException
  
  NoSuchAlgorithmException
  
  Exception
- sendFileToRegistry
  
  protected void sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile) throws DicomException, IOException, NoSuchAlgorithmException, Exception
  
  Throws:
  
  DicomException
  
  IOException
  
  NoSuchAlgorithmException
  
  Exception
- sendFilesToRegistry
  
  protected void sendFilesToRegistry(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles) throws DicomException, IOException, NoSuchAlgorithmException, Exception
  
  Throws:
  
  DicomException
  
  IOException
  
  NoSuchAlgorithmException
  
  Exception
- makeSRFileAndSendFileToRegistry
  
  protected void makeSRFileAndSendFileToRegistry(CTDose ctDose)
- deleteFilesAndDatabaseRecords
  
  protected void deleteFilesAndDatabaseRecords(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles) throws DicomException, IOException
  
  Throws:
  
  DicomException
  
  IOException
- deleteFilesAndSetDatabaseRecordsToReferenced
  
  protected void deleteFilesAndSetDatabaseRecordsToReferenced(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles) throws DicomException, IOException
  
  Throws:
  
  DicomException
  
  IOException
- findCandidateFilesToSendToRegistry
  
  protected long findCandidateFilesToSendToRegistry(InformationEntity ie, String localPrimaryKeyValue, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles, long mostRecentInsertionTime) throws DicomException
  
  Throws:
  
  DicomException
- findSuitableSRFilesAndSendThemToRegistry
  
  protected boolean findSuitableSRFilesAndSendThemToRegistry(String studyLocalPrimaryKeyValue) throws DicomException, IOException, NoSuchAlgorithmException, Exception
  
  Throws:
  
  DicomException
  
  IOException
  
  NoSuchAlgorithmException
  
  Exception
- setSelectedDatabaseRecordIsRadiationDoseSR
  
  protected void setSelectedDatabaseRecordIsRadiationDoseSR(String filename) throws DicomException
  
  Throws:
  
  DicomException
- setSelectedDatabaseRecordIsRadiationDoseScreen
  
  protected void setSelectedDatabaseRecordIsRadiationDoseScreen(String filename) throws DicomException
  
  Throws:
  
  DicomException
- setSelectedDatabaseRecordIsExposureDoseSequence
  
  protected void setSelectedDatabaseRecordIsExposureDoseSequence(String filename) throws DicomException
  
  Throws:
  
  DicomException
- setSelectedDatabaseRecordHasBeenSentToRegistry
  
  protected void setSelectedDatabaseRecordHasBeenSentToRegistry(String filename) throws DicomException
  
  Throws:
  
  DicomException
- alreadyHaveIt
  
  protected boolean alreadyHaveIt(AttributeList uniqueKeys) throws DicomException
  
  Throws:
  
  DicomException
- main
  
  public static void main(String[] arg)
  
  Wait for incoming dose screen images and SRs and send to registry.
  
  Parameters:
  
  arg - none

Class DoseReporterWithLegacyOCRAndAutoSendToRegistry

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Details

defaultPropertiesFileName

propertyName_SelectedDoseRegistry

propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

propertyName_DaysBackwardsFromTodayToQuery

propertyName_RetainSourceFilesUsedForSRGeneration

propertyName_RetainGeneratedRDSRFiles

propertyName_RetainDeidentifiedFiles

propertyName_RemoteAEsForQuery

propertyDelimitersForTokenizer_RemoteAEsForQuery

retainDeidentifiedFiles

retainGeneratedRDSRFiles

retainSourceFilesUsedForSRGeneration

defaultRetainDeidentifiedFiles

defaultRetainGeneratedRDSRFiles

defaultRetainSourceFilesUsedForSRGeneration

defaultSleepTimeBetweenPassesToProcessReceivedFiles

defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

defaultSleepTimeBetweenPassesToQueryRemoteAEs

defaultDaysBackwardsFromTodayToQuery

sleepTimeBetweenPassesToProcessReceivedFiles

intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

sleepTimeBetweenPassesToQueryRemoteAEs

daysBackwardsFromTodayToQuery

millisecondsPerDay

properties

networkApplicationProperties

networkApplicationInformation

ourCalledAETitle

remoteAEsForQuery

databaseInformationModel

remoteHost

buildDate

savedImagesFolder

storedFilePathStrategy

studyHasBeenProcessedColumnName

instanceHasBeenSentToRegistryColumnName

instanceIsRadiationDoseSRColumnName

instanceIsRadiationDoseScreenColumnName

instanceIsExposureDoseSequenceColumnName

studyInstanceUIDColumnName

sopClassUIDColumnName

manufacturerColumnName

imageTypeColumnName

instanceCreatorUIDColumnName

sourceApplicationEntityTitleColumnName

instanceLocalParentReferenceColumnName

instanceLocalFileNameColumnName

instanceLocalFileReferenceTypeColumnName

instanceLocalPrimaryKeyColumnName

Constructor Details

DoseReporterWithLegacyOCRAndAutoSendToRegistry

Method Details

getBuildDate

loadProperties

deidentifyFile

sendFileToRegistry

sendFileToRegistry

sendFilesToRegistry

makeSRFileAndSendFileToRegistry

deleteFilesAndDatabaseRecords

deleteFilesAndSetDatabaseRecordsToReferenced

findCandidateFilesToSendToRegistry

findSuitableSRFilesAndSendThemToRegistry

setSelectedDatabaseRecordIsRadiationDoseSR

setSelectedDatabaseRecordIsRadiationDoseScreen

setSelectedDatabaseRecordIsExposureDoseSequence

setSelectedDatabaseRecordHasBeenSentToRegistry

alreadyHaveIt

main