Transition (LibSBML Java API)

java.lang.Object
- org.sbml.libsbml.SBase
- - org.sbml.libsbml.Transition

```
public class Transition
extends SBase
```
qual A transition of a QualitativeSpecies.
A Transition element contains at most one ListOfInputs and one ListOfOutputs and exactly one ListOfFunctionTerms.
A Transition defines the changes in level associated with the QualitativeSpecies that occur when a Transition is enabled.
In logical models, a Transition is used to specify the logical rule associated with a QualitativeSpecies (that appears as an Output of this Transition). For example, the rule 'if A > 1 : B = 2' would be encapsulated as a Transition with QualitativeSpecies 'A' as an Input and 'B' as an Output the 'if A > 1' rule being encode by the math element of a FunctionTerm with the resultLevel attribute having a value '2'.
In Petri net models, a Transition is interpreted, using the common Petri net semantics, as events that might occur within the system causing tokens to be moved.

Constructor Summary

Constructors
Constructor and Description
`Transition()` Creates a new `Transition` with the given level, version, and package version.
`Transition(long level)` Creates a new `Transition` with the given level, version, and package version.
`Transition(long level, long version)` Creates a new `Transition` with the given level, version, and package version.
`Transition(long level, long version, long pkgVersion)` Creates a new `Transition` with the given level, version, and package version.
`Transition(QualPkgNamespaces qualns)` Creates a new `Transition` with the given `QualPkgNamespaces` object.
`Transition(Transition orig)` Copy constructor for `Transition`.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`int`	`addFunctionTerm(FunctionTerm ft)` Adds a copy the given 'FunctionTerm' to this `Transition`.
`int`	`addInput(Input i)` Adds a copy the given 'Input' to this `Transition`.
`int`	`addOutput(Output o)` Adds a copy the given 'Output' to this `Transition`.
`Transition`	`cloneObject()` Creates and returns a deep copy of this `Transition` object.
`DefaultTerm`	`createDefaultTerm()` Creates a new `DefaultTerm` object, adds it to this Transitions `ListOfFunctionTerms` and returns the `DefaultTerm` object created.
`FunctionTerm`	`createFunctionTerm()` Creates a new `FunctionTerm` object, adds it to this Transitions `ListOfFunctionTerms` and returns the `FunctionTerm` object created.
`Input`	`createInput()` Creates a new `Input` object, adds it to this Transitions `ListOfInputs` and returns the `Input` object created.
`Output`	`createOutput()` Creates a new `Output` object, adds it to this Transitions `ListOfOutputs` and returns the `Output` object created.
`void`	`delete()` Explicitly deletes the underlying native object.
`DefaultTerm`	`getDefaultTerm()` Get the `DefaultTerm` from the `ListOfFunctionTerms`.
`SBase`	`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`java.lang.String`	`getElementName()` Returns the XML name of this object.
`FunctionTerm`	`getFunctionTerm(long n)` Get a `FunctionTerm` from the `ListOfFunctionTerms`.
`FunctionTerm`	`getFunctionTerm(java.lang.String sid)` Get a `FunctionTerm` from the `ListOfFunctionTerms` based on its identifier.
`java.lang.String`	`getId()` Returns the value of the 'id' attribute of this `Transition`.
`Input`	`getInput(long n)` Get a `Input` from the `ListOfInputs`.
`Input`	`getInput(java.lang.String sid)` Get a `Input` from the `ListOfInputs` based on its identifier.
`Input`	`getInputBySpecies(java.lang.String sid)` Get a `Input` from the `ListOfInputs` based on its qualitativeSpecies attribute.
`ListOfFunctionTerms`	`getListOfFunctionTerms()` Returns the 'ListOfFunctionTerms' in this `Transition` object.
`ListOfInputs`	`getListOfInputs()` Returns the 'ListOfInputs' in this `Transition` object.
`ListOfOutputs`	`getListOfOutputs()` Returns the 'ListOfOutputs' in this `Transition` object.
`java.lang.String`	`getName()` Returns the value of the 'name' attribute of this `Transition`.
`long`	`getNumFunctionTerms()` Get the number of `FunctionTerm` objects in this `Transition`.
`long`	`getNumInputs()` Get the number of `Input` objects in this `Transition`.
`long`	`getNumOutputs()` Get the number of `Output` objects in this `Transition`.
`Output`	`getOutput(long n)` Get a `Output` from the `ListOfOutputs`.
`Output`	`getOutput(java.lang.String sid)` Get a `Output` from the `ListOfOutputs` based on its identifier.
`Output`	`getOutputBySpecies(java.lang.String sid)` Get a `Output` from the `ListOfOutputs` based on its qualitativeSpecies attribute.
`int`	`getTypeCode()` Returns the libSBML type code of this object instance.
`boolean`	`hasRequiredAttributes()` Predicate returning `true` if all the required attributes for this `Transition` object have been set.
`boolean`	`hasRequiredElements()` Predicate returning `true` if all the required attributes for this `Transition` object have been set.
`boolean`	`isSetDefaultTerm()` Predicate returning `true` if the defaultTerm for this `Transition` object has been set.
`boolean`	`isSetId()` Predicate returning `true` or `false` depending on whether this `Transition`'s 'id' attribute has been set.
`boolean`	`isSetName()` Predicate returning `true` or `false` depending on whether this `Transition`'s 'name' attribute has been set.
`FunctionTerm`	`removeFunctionTerm(long n)` Removes the nth `FunctionTerm` from the `ListOfFunctionTerms` within this `Transition`.
`FunctionTerm`	`removeFunctionTerm(java.lang.String sid)` Removes the `FunctionTerm` with the given identifier from the `ListOfFunctionTerms` within this `Transition` and returns a pointer to it.
`Input`	`removeInput(long n)` Removes the nth `Input` from the `ListOfInputs` within this `Transition`.
`Input`	`removeInput(java.lang.String sid)` Removes the `Input` with the given identifier from the `ListOfInputs` within this `Transition` and returns a pointer to it.
`Output`	`removeOutput(long n)` Removes the nth `Output` from the `ListOfOutputs` within this `Transition`.
`Output`	`removeOutput(java.lang.String sid)` Removes the `Output` with the given identifier from the `ListOfOutputs` within this `Transition` and returns a pointer to it.
`int`	`setDefaultTerm(DefaultTerm dt)` Sets the given 'DefaultTerm' to this `Transition`.
`int`	`setId(java.lang.String id)` Sets the value of the 'id' attribute of this `Transition`.
`int`	`setName(java.lang.String name)` Sets the value of the 'name' attribute of this `Transition`.
`int`	`unsetId()` Unsets the value of the 'id' attribute of this `Transition`.
`int`	`unsetName()` Unsets the value of the 'name' attribute of this `Transition`.

Methods inherited from class org.sbml.libsbml.SBase
addCVTerm, addCVTerm, appendAnnotation, appendAnnotation, appendNotes, appendNotes, connectToChild, deleteDisabledPlugins, deleteDisabledPlugins, disablePackage, enablePackage, equals, getAncestorOfType, getAncestorOfType, getAnnotation, getAnnotationString, getColumn, getCVTerm, getCVTerms, getDisabledPlugin, getLevel, getLine, getListOfAllElements, getListOfAllElements, getListOfAllElementsFromPlugins, getListOfAllElementsFromPlugins, getMetaId, getModel, getModelHistory, getNamespaces, getNotes, getNotesString, getNumCVTerms, getNumDisabledPlugins, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getPlugin, getPrefix, getResourceBiologicalQualifier, getResourceModelQualifier, getSBMLDocument, getSBOTerm, getSBOTermAsURL, getSBOTermID, getURI, getVersion, hashCode, hasValidLevelVersionNamespaceCombination, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetMetaId, isSetModelHistory, isSetNotes, isSetSBOTerm, isSetUserData, matchesRequiredSBMLNamespacesForAddition, matchesSBMLNamespaces, removeFromParentAndDelete, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, renameMetaIdRefs, renameSIdRefs, renameUnitSIdRefs, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setMetaId, setModelHistory, setNamespaces, setNotes, setNotes, setNotes, setSBOTerm, setSBOTerm, toSBML, toXMLNode, unsetAnnotation, unsetCVTerms, unsetMetaId, unsetModelHistory, unsetNotes, unsetSBOTerm, unsetUserData

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - Transition
```
public Transition(long level,
                  long version,
                  long pkgVersion)
           throws SBMLConstructorException
```
    Creates a new Transition with the given level, version, and package version.
    
    Parameters:
    
    level - a long integer, the SBML Level to assign to this Transition
    
    version - a long integer, the SBML Version to assign to this Transition
    
    pkgVersion - a long integer, the SBML Qual Version to assign to this Transition
    
    Throws:
    
    SBMLConstructorException
  - Transition
```
public Transition(long level,
                  long version)
           throws SBMLConstructorException
```
    Creates a new Transition with the given level, version, and package version.
    
    Parameters:
    
    level - a long integer, the SBML Level to assign to this Transition
    
    version - a long integer, the SBML Version to assign to this Transition
    
    pkgVersion - a long integer, the SBML Qual Version to assign to this Transition
    
    Throws:
    
    SBMLConstructorException
  - Transition
```
public Transition(long level)
           throws SBMLConstructorException
```
    Creates a new Transition with the given level, version, and package version.
    
    Parameters:
    
    level - a long integer, the SBML Level to assign to this Transition
    
    version - a long integer, the SBML Version to assign to this Transition
    
    pkgVersion - a long integer, the SBML Qual Version to assign to this Transition
    
    Throws:
    
    SBMLConstructorException
  - Transition
```
public Transition()
           throws SBMLConstructorException
```
    Creates a new Transition with the given level, version, and package version.
    
    Parameters:
    
    level - a long integer, the SBML Level to assign to this Transition
    
    version - a long integer, the SBML Version to assign to this Transition
    
    pkgVersion - a long integer, the SBML Qual Version to assign to this Transition
    
    Throws:
    
    SBMLConstructorException
  - Transition
```
public Transition(QualPkgNamespaces qualns)
           throws SBMLConstructorException
```
    Creates a new Transition with the given QualPkgNamespaces object.
    
    Parameters:
    
    qualns - the QualPkgNamespaces object
    
    Throws:
    
    SBMLConstructorException
  - Transition
```
public Transition(Transition orig)
           throws SBMLConstructorException
```
    Copy constructor for Transition.
    
    Parameters:
    
    orig - the Transition instance to copy.
    
    Throws:
    
    SBMLConstructorException
- Method Detail
  - delete
```
public void delete()
```
    Explicitly deletes the underlying native object.
    In general, application software will not need to call this method directly. The Java language binding for libSBML is implemented as a language wrapper that provides a Java interface to libSBML's underlying C++/C code. Some of the Java methods return objects that are linked to objects created not by Java code, but by C++ code. The Java objects wrapped around them will be deleted when the garbage collector invokes the corresponding C++ finalize() methods for the objects. The finalize() methods in turn call the Transition.delete() method on the libSBML object.
    This method is exposed in case calling programs want to ensure that the underlying object is freed immediately, and not at some arbitrary time determined by the Java garbage collector. In normal usage, callers do not need to invoke Transition.delete() themselves.
    
    Overrides:
    
    delete in class SBase
  - cloneObject
```
public Transition cloneObject()
```
    Creates and returns a deep copy of this Transition object.
    
    Overrides:
    
    cloneObject in class SBase
    
    Returns:
    
    a (deep) copy of this Transition object.
  - getElementBySId
```
public SBase getElementBySId(java.lang.String id)
```
    Returns the first child element found that has the given id in the model-wide SId namespace, or null if no such object is found.
    
    Overrides:
    
    getElementBySId in class SBase
    
    Parameters:
    
    id - string representing the id of objects to find
    
    Returns:
    
    a pointer to the SBase element with the given id.
  - getElementByMetaId
```
public SBase getElementByMetaId(java.lang.String metaid)
```
    Returns the first child element it can find with the given metaid, or itself if it has the given metaid, or null if no such object is found.
    
    Overrides:
    
    getElementByMetaId in class SBase
    
    Parameters:
    
    metaid - string representing the metaid of objects to find
    
    Returns:
    
    a pointer to the SBase element with the given metaid.
  - getId
```
public java.lang.String getId()
```
    Returns the value of the 'id' attribute of this Transition.
    
    Overrides:
    
    getId in class SBase
    
    Returns:
    
    the value of the 'id' attribute of this Transition as a string.
  - getName
```
public java.lang.String getName()
```
    Returns the value of the 'name' attribute of this Transition.
    
    Overrides:
    
    getName in class SBase
    
    Returns:
    
    the value of the 'name' attribute of this Transition as a string.
  - isSetId
```
public boolean isSetId()
```
    Predicate returning true or false depending on whether this Transition's 'id' attribute has been set.
    
    Overrides:
    
    isSetId in class SBase
    
    Returns:
    
    true if this Transition's 'id' attribute has been set, otherwise false is returned.
  - isSetName
```
public boolean isSetName()
```
    Predicate returning true or false depending on whether this Transition's 'name' attribute has been set.
    
    Overrides:
    
    isSetName in class SBase
    
    Returns:
    
    true if this Transition's 'name' attribute has been set, otherwise false is returned.
  - setId
```
public int setId(java.lang.String id)
```
    Sets the value of the 'id' attribute of this Transition.
    Overrides:
    
    setId in class SBase
    
    Parameters:
    
    id - String value of the 'id' attribute to be set
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_INVALID_ATTRIBUTE_VALUE
  - setName
```
public int setName(java.lang.String name)
```
    Sets the value of the 'name' attribute of this Transition.
    Overrides:
    
    setName in class SBase
    
    Parameters:
    
    name - String value of the 'name' attribute to be set
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_INVALID_ATTRIBUTE_VALUE
  - unsetId
```
public int unsetId()
```
    Unsets the value of the 'id' attribute of this Transition.
    Overrides:
    
    unsetId in class SBase
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_OPERATION_FAILED
  - unsetName
```
public int unsetName()
```
    Unsets the value of the 'name' attribute of this Transition.
    Overrides:
    
    unsetName in class SBase
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_OPERATION_FAILED
  - getListOfInputs
```
public ListOfInputs getListOfInputs()
```
    Returns the 'ListOfInputs' in this Transition object.
    
    Returns:
    
    the 'ListOfInputs' attribute of this Transition.
  - getInput
```
public Input getInput(long n)
```
    Get a Input from the ListOfInputs.
    
    Parameters:
    
    n - the index number of the Input to get.
    
    Returns:
    
    the nth Input in the ListOfInputs within this Transition.
    
    See Also:
    
    Transition.getNumInputs()
  - getInput
```
public Input getInput(java.lang.String sid)
```
    Get a Input from the ListOfInputs based on its identifier.
    
    Parameters:
    
    sid - a string representing the identifier of the Input to get.
    
    Returns:
    
    the Input in the ListOfInputs with the given id or null if no such Input exists.
    
    See Also:
    
    Transition.getInput(long n), Transition.getNumInputs()
  - getInputBySpecies
```
public Input getInputBySpecies(java.lang.String sid)
```
    Get a Input from the ListOfInputs based on its qualitativeSpecies attribute.
    
    Parameters:
    
    sid - a string representing the qualitativeSpecies of the Input to get.
    
    Returns:
    
    the first Input in the ListOfInputs with the given qualitativeSpecies or null if no such Input exists.
    
    See Also:
    
    , Transition.getInput(long n)
  - addInput
```
public int addInput(Input i)
```
    Adds a copy the given 'Input' to this Transition.
    Parameters:
    
    i - the Input object to add
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_INVALID_ATTRIBUTE_VALUE
  - getNumInputs
```
public long getNumInputs()
```
    Get the number of Input objects in this Transition.
    
    Returns:
    
    the number of Input objects in this Transition
  - createInput
```
public Input createInput()
```
    Creates a new Input object, adds it to this Transitions ListOfInputs and returns the Input object created.
    
    Returns:
    
    a new Input object instance
    
    See Also:
    
    Transition.addInput(Input i)
  - removeInput
```
public Input removeInput(long n)
```
    Removes the nth Input from the ListOfInputs within this Transition. and returns a pointer to it.
    The caller owns the returned item and is responsible for deleting it.
    
    Parameters:
    
    n - the index of the Input to remove.
    
    See Also:
    
    Transition.getNumInputs()
  - removeInput
```
public Input removeInput(java.lang.String sid)
```
    Removes the Input with the given identifier from the ListOfInputs within this Transition and returns a pointer to it.
    The caller owns the returned item and is responsible for deleting it. If none of the items in this list have the identifier sid, then null is returned.
    
    Parameters:
    
    sid - the identifier of the Input to remove.
    
    Returns:
    
    the Input removed. As mentioned above, the caller owns the returned item.
  - getListOfOutputs
```
public ListOfOutputs getListOfOutputs()
```
    Returns the 'ListOfOutputs' in this Transition object.
    
    Returns:
    
    the 'ListOfOutputs' attribute of this Transition.
  - getOutput
```
public Output getOutput(long n)
```
    Get a Output from the ListOfOutputs.
    
    Parameters:
    
    n - the index number of the Output to get.
    
    Returns:
    
    the nth Output in the ListOfOutputs within this Transition.
    
    See Also:
    
    Transition.getNumOutputs()
  - getOutput
```
public Output getOutput(java.lang.String sid)
```
    Get a Output from the ListOfOutputs based on its identifier.
    
    Parameters:
    
    sid - a string representing the identifier of the Output to get.
    
    Returns:
    
    the Output in the ListOfOutputs with the given id or null if no such Output exists.
    
    See Also:
    
    , Transition.getOutput(long n)
  - getOutputBySpecies
```
public Output getOutputBySpecies(java.lang.String sid)
```
    Get a Output from the ListOfOutputs based on its qualitativeSpecies attribute.
    
    Parameters:
    
    sid - a string representing the qualitativeSpecies of the Output to get.
    
    Returns:
    
    the first Output in the ListOfOutputs with the given qualitativeSpecies or null if no such Output exists.
    
    See Also:
    
    , Transition.getOutput(long n)
  - addOutput
```
public int addOutput(Output o)
```
    Adds a copy the given 'Output' to this Transition.
    Parameters:
    
    o - the Output object to add
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_INVALID_ATTRIBUTE_VALUE
  - getNumOutputs
```
public long getNumOutputs()
```
    Get the number of Output objects in this Transition.
    
    Returns:
    
    the number of Output objects in this Transition
  - createOutput
```
public Output createOutput()
```
    Creates a new Output object, adds it to this Transitions ListOfOutputs and returns the Output object created.
    
    Returns:
    
    a new Output object instance
    
    See Also:
    
    Transition.addOutput(Output o)
  - removeOutput
```
public Output removeOutput(long n)
```
    Removes the nth Output from the ListOfOutputs within this Transition. and returns a pointer to it.
    The caller owns the returned item and is responsible for deleting it.
    
    Parameters:
    
    n - the index of the Output to remove.
    
    See Also:
    
    Transition.getNumOutputs()
  - removeOutput
```
public Output removeOutput(java.lang.String sid)
```
    Removes the Output with the given identifier from the ListOfOutputs within this Transition and returns a pointer to it.
    The caller owns the returned item and is responsible for deleting it. If none of the items in this list have the identifier sid, then null is returned.
    
    Parameters:
    
    sid - the identifier of the Output to remove.
    
    Returns:
    
    the Output removed. As mentioned above, the caller owns the returned item.
  - getListOfFunctionTerms
```
public ListOfFunctionTerms getListOfFunctionTerms()
```
    Returns the 'ListOfFunctionTerms' in this Transition object.
    
    Returns:
    
    the 'ListOfFunctionTerms' attribute of this Transition.
  - getFunctionTerm
```
public FunctionTerm getFunctionTerm(long n)
```
    Get a FunctionTerm from the ListOfFunctionTerms.
    
    Parameters:
    
    n - the index number of the FunctionTerm to get.
    
    Returns:
    
    the nth FunctionTerm in the ListOfFunctionTerms within this Transition.
    
    See Also:
    
    Transition.getNumFunctionTerms()
  - getFunctionTerm
```
public FunctionTerm getFunctionTerm(java.lang.String sid)
```
    Get a FunctionTerm from the ListOfFunctionTerms based on its identifier.
    
    Parameters:
    
    sid - a string representing the identifier of the FunctionTerm to get.
    
    Returns:
    
    the FunctionTerm in the ListOfFunctionTerms with the given id or null if no such FunctionTerm exists.
    
    See Also:
    
    , Transition.getFunctionTerm(long n)
  - addFunctionTerm
```
public int addFunctionTerm(FunctionTerm ft)
```
    Adds a copy the given 'FunctionTerm' to this Transition.
    Parameters:
    
    ft - the FunctionTerm object to add
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_INVALID_ATTRIBUTE_VALUE
  - getNumFunctionTerms
```
public long getNumFunctionTerms()
```
    Get the number of FunctionTerm objects in this Transition.
    
    Returns:
    
    the number of FunctionTerm objects in this Transition
  - createFunctionTerm
```
public FunctionTerm createFunctionTerm()
```
    Creates a new FunctionTerm object, adds it to this Transitions ListOfFunctionTerms and returns the FunctionTerm object created.
    
    Returns:
    
    a new FunctionTerm object instance
    
    See Also:
    
    Transition.addFunctionTerm(FunctionTerm ft)
  - removeFunctionTerm
```
public FunctionTerm removeFunctionTerm(long n)
```
    Removes the nth FunctionTerm from the ListOfFunctionTerms within this Transition. and returns a pointer to it.
    The caller owns the returned item and is responsible for deleting it.
    
    Parameters:
    
    n - the index of the FunctionTerm to remove.
    
    See Also:
    
    Transition.getNumFunctionTerms()
  - removeFunctionTerm
```
public FunctionTerm removeFunctionTerm(java.lang.String sid)
```
    Removes the FunctionTerm with the given identifier from the ListOfFunctionTerms within this Transition and returns a pointer to it.
    The caller owns the returned item and is responsible for deleting it. If none of the items in this list have the identifier sid, then null is returned.
    
    Parameters:
    
    sid - the identifier of the FunctionTerm to remove.
    
    Returns:
    
    the FunctionTerm removed. As mentioned above, the caller owns the returned item.
  - createDefaultTerm
```
public DefaultTerm createDefaultTerm()
```
    Creates a new DefaultTerm object, adds it to this Transitions ListOfFunctionTerms and returns the DefaultTerm object created.
    
    Returns:
    
    a new DefaultTerm object instance
    
    See Also:
    
    Transition.setDefaultTerm(DefaultTerm ft)
  - setDefaultTerm
```
public int setDefaultTerm(DefaultTerm dt)
```
    Sets the given 'DefaultTerm' to this Transition.
    Parameters:
    
    dt - the DefaultTerm object to add
    
    Returns:
    integer value indicating success/failure of the function. The possible values returned by this function are:
    
    LIBSBML_OPERATION_SUCCESS
    LIBSBML_INVALID_ATTRIBUTE_VALUE
  - isSetDefaultTerm
```
public boolean isSetDefaultTerm()
```
    Predicate returning true if the defaultTerm for this Transition object has been set.
    
    Returns:
    
    a boolean value indicating whether the defaultTerm child for this object has been defined.
  - getDefaultTerm
```
public DefaultTerm getDefaultTerm()
```
    Get the DefaultTerm from the ListOfFunctionTerms.
    
    Returns:
    
    the DefaultTerm in the ListOfFunctionTerms within this Transition, or null if no such value is set.
  - getElementName
```
public java.lang.String getElementName()
```
    Returns the XML name of this object.
    
    Overrides:
    
    getElementName in class SBase
    
    Returns:
    
    the name of this element.
  - getTypeCode
```
public int getTypeCode()
```
    Returns the libSBML type code of this object instance.
    
    LibSBML attaches an identifying code to every kind of SBML object. These are integer constants known as SBML type codes. The names of all the codes begin with the characters SBML_. In the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbmlConstants. Note that different Level 3 package plug-ins may use overlapping type codes to identify the package to which a given object belongs, call the getPackageName() method on the object.
    
    Overrides:
    
    getTypeCode in class SBase
    
    Returns:
    
    the SBML type code for this object: SBML_QUAL_TRANSITION
    
    See Also:
    
    Transition.getElementName(), SBase.getPackageName()
    
    "Warning:"
    
    The specific integer values of the possible type codes may be reused by different Level 3 package plug-ins. Thus, to identifiy the correct code, it is necessary to invoke both getTypeCode() and getPackageName().
  - hasRequiredAttributes
```
public boolean hasRequiredAttributes()
```
    Predicate returning true if all the required attributes for this Transition object have been set.
    Overrides:
    
    hasRequiredAttributes in class SBase
    
    Returns:
    
    a boolean value indicating whether all the required attributes for this object have been defined.
    
    "Note:"
    The required attributes for a Transition object are:
    
    'output'
  - hasRequiredElements
```
public boolean hasRequiredElements()
```
    Predicate returning true if all the required attributes for this Transition object have been set.
    Overrides:
    
    hasRequiredElements in class SBase
    
    Returns:
    
    a boolean value indicating whether all the required elements for this object have been defined.
    
    "Note:"
    The required elements for a Transition object are:
    
    'output'

Class Transition

Constructor Summary

Method Summary

Methods inherited from class org.sbml.libsbml.SBase

Methods inherited from class java.lang.Object

Constructor Detail

Transition

Transition

Transition

Transition

Transition

Transition

Method Detail

delete

cloneObject

getElementBySId

getElementByMetaId

getId

getName

isSetId

isSetName

setId

setName

unsetId

unsetName

getListOfInputs

getInput

getInput

getInputBySpecies

addInput

getNumInputs

createInput

removeInput

removeInput

getListOfOutputs

getOutput

getOutput

getOutputBySpecies

addOutput

getNumOutputs

createOutput

removeOutput

removeOutput

getListOfFunctionTerms

getFunctionTerm

getFunctionTerm

addFunctionTerm

getNumFunctionTerms

createFunctionTerm

removeFunctionTerm

removeFunctionTerm

createDefaultTerm

setDefaultTerm

isSetDefaultTerm

getDefaultTerm

getElementName

getTypeCode

hasRequiredAttributes

hasRequiredElements