pal.supgma

Class RateHandler.Utils

java.lang.Object

pal.supgma.RateHandler.Utils

Enclosing interface:

RateHandler

public static final class RateHandler.Utils
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
RateHandler.Utils()

Method Summary

Methods

Modifier and Type	Method and Description
static int	getArbitaryIntervalCount(double[] intervalChangeTimes, double maxSampleTime)
static RateHandler	getArbitaryIntervalHandler(double[] times)
static RateHandler	getOneRatePerIntervalHandler()
static RateHandler	getSetRateHandler(double rate, int units)
static RateHandler	getSetRateHandler(MutationRateModel model)
static RateHandler	getSingleRateHandler()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RateHandler.Utils

public RateHandler.Utils()

Method Detail

getSingleRateHandler

public static final RateHandler getSingleRateHandler()

getArbitaryIntervalCount

public static final int getArbitaryIntervalCount(double[] intervalChangeTimes,
                           double maxSampleTime)

Returns:

the number of intervals given the arbitary intervalChangeTimes (assumed to hold no negative numbers not including zero) and the maxSampleTime

getSetRateHandler

public static final RateHandler getSetRateHandler(double rate,
                            int units)

getSetRateHandler

public static final RateHandler getSetRateHandler(MutationRateModel model)

getOneRatePerIntervalHandler

public static final RateHandler getOneRatePerIntervalHandler()

getArbitaryIntervalHandler

public static final RateHandler getArbitaryIntervalHandler(double[] times)