pal.substmodel

Interface SingleSplitDistribution

All Superinterfaces:

NeoParameterized

All Known Implementing Classes:

ConstantIndependentSingleSplitDistribution, SaturatedSingleSplitDistribution, VariableIndependentSingleSplitDistribution

public interface SingleSplitDistribution
extends NeoParameterized

Method Summary

Methods

Modifier and Type	Method and Description
double[][]	getDistributionInfo() Obtain the distribution information stored in the following format: [beforeclass][afterclass] For example, the probability of evolving in class 0 before the split, and class 1 after the split - [0][1]
int	getNumberOfBaseTransitionCategories()

Methods inherited from interface pal.misc.NeoParameterized

getDefaultValues, getLowerLimit, getNumberOfParameters, getParameters, getUpperLimit, setParameters

Method Detail

getNumberOfBaseTransitionCategories

int getNumberOfBaseTransitionCategories()

getDistributionInfo

double[][] getDistributionInfo()

Obtain the distribution information stored in the following format: [beforeclass][afterclass] For example, the probability of evolving in class 0 before the split, and class 1 after the split - [0][1]

Returns:

an appropriate matrix representing the probability of evolving in the different combinations of before and after classes