See: Description
| Interface | Description |
|---|---|
| LikelihoodEvaluator | |
| LikelihoodEvaluator.MLResult | |
| ReplicateLikelihoodEvaluator | |
| TopologyTestEngine.StatisticsHandler | |
| TopologyTestEngine.TestResult | |
| TopologyTestEngine.TopologyPool |
| Class | Description |
|---|---|
| BootstrapStatistics |
computation of bootstrap estimators (BIAS, SD, VAR, CI)
given a statistic theta and corresponding bootstrap replicates.
|
| ChiSquareDistribution |
chi-square distribution
(distribution of sum of squares of n uniform random variables)
(Parameter: n; mean: n; variance: 2*n)
The chi-square distribution is a special case of the Gamma distribution
(shape parameter = n/2.0, scale = 2.0).
|
| ChiSquareTest |
chi-square test
|
| ContigencyTable |
Class for permuting contigency tables and determining the likelihood of the table.
|
| DiscreteStatistics |
simple discrete statistics (mean, variance, cumulative probability, quantiles etc.)
|
| ExponentialDistribution |
exponential distribution.
|
| FisherExact |
This does a one tail fisher exact test.
|
| GammaDistribution |
gamma distribution.
|
| GeneralTopologyPool | |
| KishinoHasegawaTest |
Kishino-Hasegawa-(Templeton)-Test (1989, 1983) to
compare a set of evolutionary hypotheses
|
| LikelihoodEvaluator.SimpleMLResult | |
| LikelihoodEvaluator.Utils | |
| LikelihoodRatioTest |
Likelihood ratio test based on chi-square statistics
|
| ModelSupport |
Computes Akaike weights and expected Akaike weights
(relative evidence, expected relative evidence)
for a set of models and computes corresponding confidence sets
|
| NormalDistribution |
normal distribution (pdf, cdf, quantile)
|
| ParetoDistribution |
Pareto distribution
(scale-free distribution without characteristic length scale).
|
| PenalizedLikelihood |
Penalized likelihood criteria
|
| RELLTopologyPool | |
| ReplicateLikelihoodEvaluator.Utils | |
| ShimodairaHasegawaStatistics |
Title: ShimodairaHasegawaStatistics
|
| ShimodairaHasegawaTest |
Shimodaira-Hasegawa-Test (1999) to
compare a set of evolutionary hypotheses
|
| TopologyTestEngine |