pal.statistics

Interface LikelihoodEvaluator

public interface LikelihoodEvaluator

Nested Class Summary

Nested Classes

Modifier and Type	Interface and Description
static interface	LikelihoodEvaluator.MLResult
static class	LikelihoodEvaluator.SimpleMLResult
static class	LikelihoodEvaluator.Utils

Method Summary

Methods

Modifier and Type	Method and Description
double	calculateLikelihood(Tree tree, Alignment alignment)
LikelihoodEvaluator.MLResult	getMLOptimised(Tree tree, Alignment alignment, AlgorithmCallback callback)

Method Detail

getMLOptimised

LikelihoodEvaluator.MLResult getMLOptimised(Tree tree,
                                          Alignment alignment,
                                          AlgorithmCallback callback)

calculateLikelihood

double calculateLikelihood(Tree tree,
                         Alignment alignment)