Uses of Interface
pal.misc.SampleInformation

Packages that use SampleInformation

Package	Description
pal.mep	Classes for the analysis of "measurably evolving populations" (mep).
pal.misc	Classes that don't fit elsewhere ;^)
pal.treesearch

Uses of SampleInformation in pal.mep

Methods in pal.mep with parameters of type SampleInformation

Modifier and Type	Method and Description
ConstraintModel	DeltaModel.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
ConstraintModel	MutationRateModel.Factory.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)

Uses of SampleInformation in pal.misc

Classes in pal.misc that implement SampleInformation

Modifier and Type	Class and Description
class	TOCDSampleInformation Title: TOCDSampleInformation

Methods in pal.misc that return SampleInformation

Modifier and Type	Method and Description
SampleInformation	SampleInformation.Factory.createSampleInformation(java.lang.String[] allLeafIDs)

Uses of SampleInformation in pal.treesearch

Constructors in pal.treesearch with parameters of type SampleInformation

Constructor and Description
FixedBSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)
FixedSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)
MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)
MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double[] rateChangeTimes)
SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)
SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, boolean allowMetaRate)