Uses of Package
pal.io

Packages that use pal.io

Package	Description
pal.coalescent	Classes to model population genetic processes using the coalescent.
pal.io	Classes for simple (formatted) input/output from/to files, strings and standard-in/out streams.
pal.mep	Classes for the analysis of "measurably evolving populations" (mep).
pal.substmodel	Classes describing substitution models, i.e.

Classes in pal.io used by pal.coalescent

Class and Description
FormattedOutput tools to simplify formatted output to a stream

Classes in pal.io used by pal.io

Class and Description
FormattedInput tools to simplify formatted input from an input stream
FormattedOutput tools to simplify formatted output to a stream
InputSource convenience class to open input streams linked to files, stdin, and strings
NexusParseException Exception class for the NexusParser.
OutputTarget convenience class to create output streams linked to files, stdout, and strings

Classes in pal.io used by pal.mep

Class and Description
FormattedOutput tools to simplify formatted output to a stream

Classes in pal.io used by pal.substmodel

Class and Description
FormattedOutput tools to simplify formatted output to a stream