| Package | Description |
|---|---|
| pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
| Modifier and Type | Method and Description |
|---|---|
LHCalculator.Internal |
LHCalculator.Generator.createNewInternal() |
LHCalculator.Internal |
LHCalculator.Generator.createNewInternal(LHCalculator.Generator patentGenerator)
An obscure method, primarily used by the High Accuracy calculator
|
| Constructor and Description |
|---|
SimpleUnconstrainedLikelihoodModel.InternalImpl(LHCalculator.Internal base,
SubstitutionModel model) |