Uses of Interface
pal.eval.LHCalculator.Generator

Packages that use LHCalculator.Generator

Package	Description
pal.eval	Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.

Uses of LHCalculator.Generator in pal.eval

Methods in pal.eval that return LHCalculator.Generator

Modifier and Type	Method and Description
LHCalculator.Generator	LHCalculator.Factory.createSeries(int numberOfCategories, DataType dt)

Methods in pal.eval with parameters of type LHCalculator.Generator

Modifier and Type	Method and Description
static UnconstrainedLikelihoodModel.Instance	SimpleUnconstrainedLikelihoodModel.createInstance(LHCalculator.Generator base, SubstitutionModel model) Create a SimpleUnconstrainedLikelihoodModel instance
LHCalculator.External	LHCalculator.Generator.createNewExternal(LHCalculator.Generator parentGenerator) An obscure method, primarily used by the High Accuracy calculator
LHCalculator.Internal	LHCalculator.Generator.createNewInternal(LHCalculator.Generator patentGenerator) An obscure method, primarily used by the High Accuracy calculator
LHCalculator.Leaf	LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup, int numberOfPatterns, LHCalculator.Generator parentGenerator)

Constructors in pal.eval with parameters of type LHCalculator.Generator

Constructor and Description
SimpleLeafCalculator(int[] patternStateMatchup, int numberOfPatterns, int numberOfStates, int numberOfCategories, LHCalculator.Generator parent)