Uses of Interface
pal.distance.DistanceMatrixAccess

Packages that use DistanceMatrixAccess

Package	Description
pal.distance	Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).
pal.supgma

Uses of DistanceMatrixAccess in pal.distance

Methods in pal.distance that return DistanceMatrixAccess

Modifier and Type	Method and Description
static DistanceMatrixAccess	DistanceMatrixAccess.Utils.createEvolutionary(Alignment a, SubstitutionModel sm)
static DistanceMatrixAccess	DistanceMatrixAccess.Utils.createSimple(DistanceMatrix base)

Uses of DistanceMatrixAccess in pal.supgma

Methods in pal.supgma with parameters of type DistanceMatrixAccess

Modifier and Type	Method and Description
SUPGMABase.PopulationParameters	SUPGMABase.process(DistanceMatrixAccess alternativeSource, AlgorithmCallback callback, LMSSolver solver)

Constructors in pal.supgma with parameters of type DistanceMatrixAccess

Constructor and Description
SUPGMABase(DistanceMatrixAccess distanceAccess, DistanceMatrixGenerator replicateGenerator, TimeOrderCharacterData tocd)