pal.distance

Class DistanceMatrixUtils

java.lang.Object

pal.distance.DistanceMatrixUtils

All Implemented Interfaces:

java.io.Serializable

public class DistanceMatrixUtils
extends java.lang.Object
implements java.io.Serializable

Auxillary functions for distance matrices

Version:

$Id: DistanceMatrixUtils.java,v 1.6 2002/12/05 04:27:28 matt Exp $

Author:

Alexei Drummond

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
DistanceMatrixUtils()

Method Summary

Methods

Modifier and Type	Method and Description
static DistanceMatrix	minus(DistanceMatrix parent, int taxaToRemove) Returns a distance matrix with the specified taxa removed.
static double	squaredDistance(DistanceMatrix mat1, DistanceMatrix mat2, boolean weighted) compute squared distance to second distance matrix.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DistanceMatrixUtils

public DistanceMatrixUtils()

Method Detail

squaredDistance

public static double squaredDistance(DistanceMatrix mat1,
                     DistanceMatrix mat2,
                     boolean weighted)

compute squared distance to second distance matrix. If both matrices have the same size it is assumed that the order of the taxa is identical.

minus

public static DistanceMatrix minus(DistanceMatrix parent,
                   int taxaToRemove)

Returns a distance matrix with the specified taxa removed.