| Interface | Description |
|---|---|
| RateHandler | |
| SUPGMABase.CISummary | |
| SUPGMABase.PopulationParameters | |
| ThetaHandler |
| Class | Description |
|---|---|
| RateHandler.Utils | |
| SUPGMABase | |
| SUPGMADistanceMatrix |
Corrects distances in a distance matrix such that all tips appear
contemporaneous, given a time/date and rate information for the
taxa.
|
| SUPGMATree |
constructs an SUPGMA tree from pairwise distances.
|
| ThetaHandler.Utils |