| Package | Description |
|---|---|
| pal.statistics |
Classes with useful for statistics (normal distribution,
Gamma distribution, chi-square distribution, exponential distribution,
likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)
|
| Modifier and Type | Method and Description |
|---|---|
static ReplicateLikelihoodEvaluator |
ReplicateLikelihoodEvaluator.Utils.createRELLEvaluator(SubstitutionModel model)
Create a ReplicateLikelihoodEvaluator that based likelihood on original tree (does no optimisation)
|
| Constructor and Description |
|---|
GeneralTopologyPool(Tree[] topologies,
LikelihoodEvaluator baseCalculator,
ReplicateLikelihoodEvaluator replicateCalculator,
Alignment baseAlignment,
AlignmentGenerator replicateGenerator) |