| Package | Description |
|---|---|
| pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
| pal.treesearch |
| Modifier and Type | Class and Description |
|---|---|
static class |
SimpleUnconstrainedLikelihoodModel.InternalImpl |
| Modifier and Type | Method and Description |
|---|---|
UnconstrainedLikelihoodModel.Internal |
UnconstrainedLikelihoodModel.Instance.createNewInternal() |
| Modifier and Type | Method and Description |
|---|---|
UnconstrainedLikelihoodModel.Internal |
GeneralConstructionTool.allocateNewFreeInternalCalculator() |
UnconstrainedLikelihoodModel.Internal |
FixedSRDTGlobalClockModel.createNewFreeInternal() |
UnconstrainedLikelihoodModel.Internal |
SRDTGlobalClockModel.createNewFreeInternal() |
UnconstrainedLikelihoodModel.Internal |
GlobalClockModel.createNewFreeInternal() |
UnconstrainedLikelihoodModel.Internal |
MRDTGlobalClockModel.createNewFreeInternal() |
UnconstrainedLikelihoodModel.Internal |
ConstraintModel.createNewFreeInternal() |
UnconstrainedLikelihoodModel.Internal |
FixedBSRDTGlobalClockModel.createNewFreeInternal() |
UnconstrainedLikelihoodModel.Internal |
UnconstrainedModel.createNewFreeInternal() |