| Package | Description |
|---|---|
| pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
| pal.treesearch |
| Modifier and Type | Method and Description |
|---|---|
MolecularClockLikelihoodModel.Internal |
MolecularClockLikelihoodModel.Instance.createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter) |
| Modifier and Type | Method and Description |
|---|---|
MolecularClockLikelihoodModel.Internal |
FixedSRDTGlobalClockModel.createNewClockInternal() |
MolecularClockLikelihoodModel.Internal |
SRDTGlobalClockModel.createNewClockInternal() |
MolecularClockLikelihoodModel.Internal |
GlobalClockModel.createNewClockInternal() |
MolecularClockLikelihoodModel.Internal |
MRDTGlobalClockModel.createNewClockInternal() |
MolecularClockLikelihoodModel.Internal |
ConstraintModel.GroupManager.createNewClockInternal() |
MolecularClockLikelihoodModel.Internal |
FixedBSRDTGlobalClockModel.createNewClockInternal() |
protected MolecularClockLikelihoodModel.Internal |
AbstractParentableConstrainedNode.getConstrainedInternal() |