ReadDistanceMatrix

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java.lang.Object
- pal.distance.DistanceMatrix
- - pal.distance.ReadDistanceMatrix

All Implemented Interfaces:

java.io.Serializable, IdGroup
```
public class ReadDistanceMatrix
extends DistanceMatrix
```
reads pairwise distance matrices in PHYLIP format (full matrix)

Version:

$Id: ReadDistanceMatrix.java,v 1.4 2002/12/05 04:27:28 matt Exp $

Author:

Korbinian Strimmer, Alexei Drummond

See Also:

Serialized Form

- Nested Class Summary
  - Nested classes/interfaces inherited from interface pal.misc.IdGroup
    IdGroup.Utils
- Constructor Summary
  
  Constructors
  Constructor and Description
  
  ReadDistanceMatrix(java.io.PushbackReader input)
  read from stream
  
  ReadDistanceMatrix(java.lang.String file)
  read from file
- Method Summary
  - Methods inherited from class pal.distance.DistanceMatrix
    absoluteDistance, addDistance, getClonedDistances, getClosestIndex, getClosestIndex, getDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setDistances, setIdentifier, setIdGroup, squaredDistance, toString, whichIdNumber
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ReadDistanceMatrix

public ReadDistanceMatrix(java.io.PushbackReader input)
                   throws DistanceParseException

read from stream

Throws:: DistanceParseException

ReadDistanceMatrix

public ReadDistanceMatrix(java.lang.String file)
                   throws DistanceParseException,
                          java.io.IOException

read from file

Throws:: DistanceParseException; java.io.IOException

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