BootstrappedAlignment

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java.lang.Object
- pal.alignment.AbstractAlignment
- - pal.alignment.BootstrappedAlignment

All Implemented Interfaces:

java.io.Serializable, Alignment, IdGroup, Report
```
public class BootstrappedAlignment
extends AbstractAlignment
```
generates bootstrapped alignments from a raw alignment

Version:

$Id: BootstrappedAlignment.java,v 1.6 2003/03/23 00:12:57 matt Exp $

Author:

Korbinian Strimmer

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from interface pal.misc.IdGroup
  IdGroup.Utils

Field Summary
- Fields inherited from class pal.alignment.AbstractAlignment
  idGroup, numSeqs, numSites
- Fields inherited from interface pal.alignment.Alignment
  GAP, GAP_TLA, GAPS, UNKNOWN, UNKNOWN_TLA

Constructor Summary

Constructors
Constructor and Description

BootstrappedAlignment(Alignment raw)
Constructor

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`bootstrap()` bootstrap alignment
`char`	`getData(int seq, int site)` sequence alignment at (sequence, site)

Methods inherited from class pal.alignment.AbstractAlignment
getAlignedSequenceString, getChar, getDataType, getIdCount, getIdentifier, getLength, getSequenceCount, getSiteCount, getState, getStates, guessDataType, isGap, isUnknownState, report, setDataType, setIdentifier, toString, whichIdNumber

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - BootstrappedAlignment
```
public BootstrappedAlignment(Alignment raw)
```
    Constructor
    
    Parameters:
    
    raw - original alignment
- Method Detail
  - getData
```
public char getData(int seq,
                    int site)
```
    sequence alignment at (sequence, site)
    
    Specified by:
    
    getData in interface Alignment
    
    Specified by:
    
    getData in class AbstractAlignment
  - bootstrap
```
public void bootstrap()
```
    bootstrap alignment

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