AminoAcidModel (JEBL2 lib API)

java.lang.Object

jebl.evolution.substmodel.AbstractRateMatrix

jebl.evolution.substmodel.AminoAcidModel

All Implemented Interfaces:: Serializable, Cloneable, RateMatrix

Direct Known Subclasses:: WAG

public abstract class AminoAcidModel extends AbstractRateMatrix

base class of rate matrices for amino acids

Version:

$Id: AminoAcidModel.java 185 2006-01-23 23:03:18Z rambaut $

Author:

Korbinian Strimmer

See Also:

Serialized Form

Method Summary

Methods inherited from class jebl.evolution.substmodel.AbstractRateMatrix
getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface jebl.evolution.substmodel.RateMatrix
getUniqueName