Uses of Class
jebl.evolution.sequences.GeneticCode
Packages that use GeneticCode
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Uses of GeneticCode in jebl.evolution.sequences
Fields in jebl.evolution.sequences declared as GeneticCodeModifier and TypeFieldDescriptionstatic final GeneticCodeGeneticCode.ALT_YEASTstatic final GeneticCodeGeneticCode.ASCIDIAN_MTstatic final GeneticCodeGeneticCode.BACTERIALstatic final GeneticCodeGeneticCode.BLEPHARISMA_NUCstatic final GeneticCodeGeneticCode.CILIATEstatic final GeneticCodeGeneticCode.ECHINODERM_MTstatic final GeneticCodeGeneticCode.EUPLOTID_NUCstatic final GeneticCodeGeneticCode.FLATWORM_MTstatic final GeneticCode[]GeneticCode.GENETIC_CODESDeprecated.static final GeneticCodeGeneticCode.INVERTEBRATE_MTstatic final GeneticCodeGeneticCode.MOLD_PROTOZOAN_MTstatic final GeneticCodeGeneticCode.MYCOPLASMAstatic final GeneticCodeGeneticCode.UNIVERSALstatic final GeneticCodeGeneticCode.VERTEBRATE_MTstatic final GeneticCodeGeneticCode.YEASTMethods in jebl.evolution.sequences that return GeneticCodeModifier and TypeMethodDescriptionstatic GeneticCode[]GeneticCode.getGeneticCodesArray()static GeneticCodeGeneticCode.valueOf(int NCBITranslationTableNumber) static GeneticCodeMethods in jebl.evolution.sequences that return types with arguments of type GeneticCodeModifier and TypeMethodDescriptionstatic Iterable<GeneticCode>GeneticCode.getGeneticCodes()Returns an iterable that allows you to iterate over all the standard genetic codesMethods in jebl.evolution.sequences with parameters of type GeneticCodeModifier and TypeMethodDescriptionstatic StringUtils.translate(String nucleotideSequence, GeneticCode geneticCode) A wrapper forUtils.translateCharSequence(CharSequence,GeneticCode)that takes a nucleotide sequence as a String only rather than a CharSequence.static SequenceUtils.translate(Sequence sequence, GeneticCode geneticCode) static SequenceUtils.translate(Sequence sequence, GeneticCode geneticCode, int readingFrame) static AminoAcidState[]Utils.translate(State[] states, GeneticCode geneticCode) Translates each of a given sequence ofNucleotideStates orCodonStates to theAminoAcidStatecorresponding to it under the given genetic code.static AminoAcidState[]Utils.translate(State[] states, GeneticCode geneticCode, int readingFrame) Translates each of a given sequence ofNucleotideStates orCodonStates to theAminoAcidStatecorresponding to it under the given genetic code.static StringUtils.translateCharSequence(CharSequence nucleotideSequence, GeneticCode geneticCode) Translates the given nucleotideSequence into an amino acid sequence string, using the given geneticCode.Constructors in jebl.evolution.sequences with parameters of type GeneticCodeModifierConstructorDescriptionTranslatedSequence(Sequence source, GeneticCode geneticCode) Create a TranslatedSequence from a source codon or nucleotide sequenceTranslatedSequence(Sequence source, GeneticCode geneticCode, int frame) Create a TranslatedSequence from a source codon or nucleotide sequence
getGeneticCodes()instead