Uses of Interface
jebl.evolution.graphs.Graph
Packages that use Graph
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Uses of Graph in jebl.evolution.graphs
Methods in jebl.evolution.graphs with parameters of type GraphModifier and TypeMethodDescriptionstatic intbooleanUtils.isAcyclical(Graph graph) booleanUtils.isConnected(Graph graph) final boolean -
Uses of Graph in jebl.evolution.trees
Subinterfaces of Graph in jebl.evolution.treesModifier and TypeInterfaceDescriptioninterfaceA tree with a root (node with maximum height).interfaceA rooted or unrooted tree.Classes in jebl.evolution.trees that implement GraphModifier and TypeClassDescriptionclassclassA memory efficient rooted tree.classclassA simple rooted tree providing some ability to manipulate the tree.final classA rooted tree concrete class that wraps another tree and provides a differently rooted view of that tree.classRoot an unrooted tree.final classA simple, immutable rooted tree implementation that is a subtree of an existing tree subtending a specified set of taxa..final classA simple, and initially immutable rooted tree implementation.final classA basic implementation on an unrooted tree.classclassThis RootedTree class wraps another RootedTree and transforms the branch lengths and node heights using various functions.