Package jebl.evolution.alignments

Class BasicAlignment

java.lang.Object
jebl.evolution.alignments.BasicAlignment
All Implemented Interfaces:
Alignment, Patterns, Sequences
public class BasicAlignment extends Object implements Alignment
A basic implementation of the Alignment interface.
Version:
$Id: BasicAlignment.java 1007 2009-07-17 16:01:47Z rambaut $
Author:
Andrew Rambaut, Alexei Drummond

  • Constructor Details

    • BasicAlignment

      public BasicAlignment()
      Constructs a basic alignment with no sequences.

    • BasicAlignment

      public BasicAlignment(Collection<? extends Sequence> sequences)
      Constructs a basic alignment from a collection of sequences. The sequence objects are not copied.
      Parameters:
      sequences -

    • BasicAlignment

      public BasicAlignment(Sequence[] sequences)
      Constructs a basic alignment from an array of sequences. The sequence objects are not copied.
      Parameters:
      sequences -

  • Method Details