Uses of Class jebl.evolution.align.Align (JEBL2 lib API)

Packages that use Align

Package

Description

jebl.evolution.align

Provides classes and interfaces for pairwise alignment of two sequences.

Uses of Align in jebl.evolution.align

Subclasses of Align in jebl.evolution.align

Modifier and Type

Class

Description

class

MaximalSegmentPair

class

NeedlemanWunsch

class

NeedlemanWunschAffine

class

NeedlemanWunschLinearSpace

class

NeedlemanWunschLinearSpaceAffine

class

NonOverlapMultipleLocalAffine

Performs recursive local alignments.

class

OldNeedlemanWunschAffine

class

OverlapAlign

class

SmithWaterman

class

SmithWatermanLinearSpace

class

SmithWatermanLinearSpaceAffine

Methods in jebl.evolution.align with parameters of type Align

Modifier and Type

Method

Description

void

SequenceShuffler.shuffle(Align algorithm, String sq1, String sq2, int numShuffles)