Package jebl.evolution.trees

Class CladeSystem

  • Direct Known Subclasses:
    AttributedCladeSystem
    public class CladeSystem
extends java.lang.Object
    Stores a set of unique clades for a tree
    Version:
    $Id: CladeSystem.java 892 2008-02-27 03:53:11Z twobeers $
    Author:
    Andrew Rambaut

    • Constructor Detail

      • CladeSystem

        public CladeSystem()

      • CladeSystem

        public CladeSystem​(RootedTree tree)
        Parameters:
        tree -

    • Method Detail

      • getCladeCount

        public int getCladeCount()
        get number of unique clades

      • getClade

        public java.util.Set<Taxon> getClade​(int index)

      • getCladeString

        public java.lang.String getCladeString​(int index)

      • getCladeFrequency

        public double getCladeFrequency​(int index)
        get clade frequency

      • add

        public void add​(RootedTree tree)
        adds all the clades in the tree