Uses of Interface
jebl.evolution.coalescent.DemographicFunction
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Packages that use DemographicFunction Package Description jebl.evolution.coalescent jebl.evolution.treesimulation -
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Uses of DemographicFunction in jebl.evolution.coalescent
Classes in jebl.evolution.coalescent that implement DemographicFunction Modifier and Type Class Description classCataclysmicDemographicThis class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).classConstantPopulationThis class models coalescent intervals for a constant population (parameter: N0=present-day population size).classConstExponentialThis class models exponential growth from an initial population size.classConstLogisticThis class models logistic growth from an initial population size.classEmpiricalDemographicFunctionclassExpansionThis class models exponential growth from an initial ancestral population size.classExponentialGrowthThis class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).classExponentialLogisticThis class models logistic growth from an initial exponential phase.classLogisticGrowthThis class models logistic growth.Methods in jebl.evolution.coalescent with parameters of type DemographicFunction Modifier and Type Method Description static doubleCoalescent. calculateLogLikelihood(IntervalList intervals, DemographicFunction demographicFunction)Calculates the log likelihood of this set of coalescent intervals, given a demographic model.static voidDemographicFunction.Utils. testConsistency(DemographicFunction demographicFunction, int steps, double maxTime)This function tests the consistency of the getIntensity and getInverseIntensity methods of this demographic model.Constructors in jebl.evolution.coalescent with parameters of type DemographicFunction Constructor Description Coalescent(IntervalList intervals, DemographicFunction demographicFunction)Coalescent(RootedTree tree, DemographicFunction demographicFunction) -
Uses of DemographicFunction in jebl.evolution.treesimulation
Constructors in jebl.evolution.treesimulation with parameters of type DemographicFunction Constructor Description CoalescentIntervalGenerator(DemographicFunction demographicFunction)
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