Uses of Class
jebl.evolution.align.AlignmentTreeBuilderFactory.Result
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Packages that use AlignmentTreeBuilderFactory.Result Package Description jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences. -
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Uses of AlignmentTreeBuilderFactory.Result in jebl.evolution.align
Methods in jebl.evolution.align that return AlignmentTreeBuilderFactory.Result Modifier and Type Method Description static AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, MultipleAligner aligner, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)static AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener)Will use model F84 for nucleotides and Jukes-Cantor for amino acidstatic AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model)static AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener)static AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
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