Uses of Class
org.forester.phylogeny.data.Accession
Packages that use Accession
Package
Description
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Uses of Accession in org.forester.archaeopteryx
Method parameters in org.forester.archaeopteryx with type arguments of type AccessionModifier and TypeMethodDescriptionTreePanelUtil.createUrisForPdbWeb(PhylogenyNode node, List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel) -
Uses of Accession in org.forester.phylogeny.data
Methods in org.forester.phylogeny.data that return AccessionMethods in org.forester.phylogeny.data that return types with arguments of type AccessionMethods in org.forester.phylogeny.data with parameters of type AccessionModifier and TypeMethodDescriptionvoidSequence.addCrossReference(Accession cross_reference) intvoidSequence.setAccession(Accession accession) -
Uses of Accession in org.forester.util
Methods in org.forester.util that return AccessionModifier and TypeMethodDescriptionstatic final AccessionSequenceAccessionTools.obtainAccessorFromDataFields(PhylogenyNode n) static final AccessionSequenceAccessionTools.obtainFromSeqAccession(PhylogenyNode n) static final AccessionSequenceAccessionTools.parseAccessorFromString(String s) -
Uses of Accession in org.forester.ws.seqdb
Methods in org.forester.ws.seqdb that return AccessionModifier and TypeMethodDescriptionstatic final AccessionSequenceDbWsTools.obtainSeqAccession(PhylogenyNode node) Methods in org.forester.ws.seqdb that return types with arguments of type AccessionModifier and TypeMethodDescriptionEbiDbEntry.getCrossReferences()SequenceDatabaseEntry.getCrossReferences()UniProtEntry.getCrossReferences()Methods in org.forester.ws.seqdb with parameters of type AccessionModifier and TypeMethodDescriptionstatic SequenceDatabaseEntrySequenceDbWsTools.obtainEmblEntry(Accession acc) static SequenceDatabaseEntrySequenceDbWsTools.obtainEmblEntry(Accession acc, int max_lines_to_return) static SequenceDatabaseEntrySequenceDbWsTools.obtainRefSeqEntryFromEmbl(Accession acc) static SequenceDatabaseEntrySequenceDbWsTools.obtainRefSeqEntryFromEmbl(Accession acc, int max_lines_to_return) SequenceDbWsTools.queryEmblDb(Accession acc, int max_lines_to_return) SequenceDbWsTools.queryEmblDbForRefSeqEntry(Accession id, int max_lines_to_return)