Uses of Class
org.forester.archaeopteryx.TreePanel
Packages that use TreePanel
Package
Description
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Uses of TreePanel in org.forester.analysis
Constructors in org.forester.analysis with parameters of type TreePanelModifierConstructorDescriptionTaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy) TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name) -
Uses of TreePanel in org.forester.archaeopteryx
Methods in org.forester.archaeopteryx that return TreePanelMethods in org.forester.archaeopteryx with parameters of type TreePanelModifier and TypeMethodDescriptionstatic final StringTreePanelUtil.createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp) TreePanelUtil.createUrisForPdbWeb(PhylogenyNode node, List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel) static final voidAptxUtil.writePhylogenyToGraphicsFileNonInteractive(File outfile, int width, int height, TreePanel tree_panel, org.forester.archaeopteryx.ControlPanel ac, AptxUtil.GraphicsExportType type, Options options) -
Uses of TreePanel in org.forester.archaeopteryx.phylogeny.data
Methods in org.forester.archaeopteryx.phylogeny.data with parameters of type TreePanelModifier and TypeMethodDescriptionvoidRenderableDomainArchitecture.render(float x1, float y1, Graphics2D g, TreePanel tree_panel, boolean to_pdf) voidRenderableMsaSequence.render(float x1, float y1, Graphics2D g, TreePanel tree_panel, boolean to_pdf) voidRenderablePhylogenyData.render(float x, float y, Graphics2D g, TreePanel tree_panel, boolean to_pdf) This can be used to render phylogeny data as graphics (for example, display of the domain structure).voidRenderableVector.render(float x1, float y1, Graphics2D g, TreePanel tree_panel, boolean to_pdf) -
Uses of TreePanel in org.forester.archaeopteryx.tools
Methods in org.forester.archaeopteryx.tools with parameters of type TreePanelModifier and TypeMethodDescriptionstatic final voidBlast.openNcbiBlastWeb(String query, boolean is_nucleic_acids, JApplet applet, TreePanel p) Constructors in org.forester.archaeopteryx.tools with parameters of type TreePanelModifierConstructorDescriptionAncestralTaxonomyInferrer(MainFrame mf, TreePanel treepanel, Phylogeny phy) ImageLoader(TreePanel tp) SequenceDataRetriver(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)