Uses of Class
org.forester.phylogeny.data.Sequence
Packages that use Sequence
Package
Description
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Uses of Sequence in org.forester.io.parsers.phyloxml
Methods in org.forester.io.parsers.phyloxml that return types with arguments of type Sequence -
Uses of Sequence in org.forester.io.parsers.phyloxml.data
Methods in org.forester.io.parsers.phyloxml.data that return Sequence -
Uses of Sequence in org.forester.phylogeny
Methods in org.forester.phylogeny that return types with arguments of type SequenceMethod parameters in org.forester.phylogeny with type arguments of type SequenceModifier and TypeMethodDescriptionvoidPhylogeny.setSequenceRelationQueries(Collection<Sequence> sequencesByName) -
Uses of Sequence in org.forester.phylogeny.data
Methods in org.forester.phylogeny.data that return SequenceModifier and TypeMethodDescriptionSequenceRelation.getRef0()SequenceRelation.getRef1()NodeData.getSequence()Convenience method -- always returns the first Sequence.NodeData.getSequence(int index) Methods in org.forester.phylogeny.data that return types with arguments of type SequenceMethods in org.forester.phylogeny.data with parameters of type SequenceModifier and TypeMethodDescriptionvoidNodeData.addSequence(Sequence sequence) intvoidvoidvoidNodeData.setSequence(int index, Sequence sequence) voidNodeData.setSequence(Sequence sequence) Convenience method -- always sets the first Sequence.