Uses of Class
org.forester.archaeopteryx.Configuration
Packages that use Configuration
Package
Description
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Uses of Configuration in org.forester.archaeopteryx
Methods in org.forester.archaeopteryx that return ConfigurationMethods in org.forester.archaeopteryx with parameters of type ConfigurationModifier and TypeMethodDescriptionvoidMainPanel.addPhylogenyInNewTab(Phylogeny phy, Configuration config, String default_name, String full_path) static MainFrameArchaeopteryx.createApplication(Phylogeny phylogeny, Configuration config, String title) static MainFrameApplicationMainFrameApplication.createInstance(Phylogeny[] phys, Configuration config) static MainFrameMainFrameApplication.createInstance(Phylogeny[] phys, Configuration config, String title, File current_dir) static final OptionsOptions.createInstance(Configuration configuration) static final StringTreePanelUtil.createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp) TreePanelUtil.createUrisForPdbWeb(PhylogenyNode node, List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel) static voidAptxUtil.writePhylogenyToGraphicsFile(File intree, File outfile, int width, int height, AptxUtil.GraphicsExportType type, Configuration config) static voidAptxUtil.writePhylogenyToGraphicsFile(Phylogeny phy, File outfile, int width, int height, AptxUtil.GraphicsExportType type, Configuration config) Constructors in org.forester.archaeopteryx with parameters of type Configuration -
Uses of Configuration in org.forester.archaeopteryx.phylogeny.data
Methods in org.forester.archaeopteryx.phylogeny.data with parameters of type ConfigurationModifier and TypeMethodDescriptionstatic RenderableMsaSequenceRenderableMsaSequence.createInstance(String seq, String type, Configuration configuration) static RenderableVectorRenderableVector.createInstance(List<Double> values, DescriptiveStatistics stats, Configuration configuration) -
Uses of Configuration in org.forester.archaeopteryx.tools
Methods in org.forester.archaeopteryx.tools with parameters of type ConfigurationModifier and TypeMethodDescriptionstatic InferenceManagerInferenceManager.createInstance(Configuration c) static PhylogeneticInferenceOptionsPhylogeneticInferenceOptions.createInstance(Configuration configuration)