Uses of Class
org.jcolorbrewer.ColorBrewer

Packages that use ColorBrewer

Package	Description
org.biojava.nbio.structure.align.gui.jmol	Utility methods for better interaction with Jmol.
org.jcolorbrewer
org.jcolorbrewer.ui

Uses of ColorBrewer in org.biojava.nbio.structure.align.gui.jmol

Fields in org.biojava.nbio.structure.align.gui.jmol declared as ColorBrewer

Modifier and Type	Field	Description
protected ColorBrewer	AbstractAlignmentJmol.colorPalette

Methods in org.biojava.nbio.structure.align.gui.jmol that return ColorBrewer

Modifier and Type	Method	Description
ColorBrewer	AbstractAlignmentJmol.getColorPalette()	Return the color pattelete of the AlignmentJmol instance.

Methods in org.biojava.nbio.structure.align.gui.jmol with parameters of type ColorBrewer

Modifier and Type	Method	Description
static java.lang.String	MultipleAlignmentJmol.getJmolString(MultipleAlignment multAln, java.util.List<Atom[]> transformedAtoms, ColorBrewer colorPalette, boolean colorByBlocks)	Generate a Jmol command String that colors the aligned residues of every structure.
static java.lang.String	MultipleAlignmentJmol.getMultiBlockJmolString(MultipleAlignment multAln, java.util.List<Atom[]> transformedAtoms, ColorBrewer colorPalette, boolean colorByBlocks)	Colors every Block of the structures with a different color, following the palette.

Uses of ColorBrewer in org.jcolorbrewer

Methods in org.jcolorbrewer that return ColorBrewer

Modifier and Type	Method	Description
static ColorBrewer[]	ColorBrewer.getDivergingColorPalettes(boolean colorBlindSave)
static ColorBrewer[]	ColorBrewer.getQualitativeColorPalettes(boolean colorBlindSave)
static ColorBrewer[]	ColorBrewer.getSequentialColorPalettes(boolean colorBlindSave)
static ColorBrewer	ColorBrewer.valueOf(java.lang.String name)	Returns the enum constant of this type with the specified name.
static ColorBrewer[]	ColorBrewer.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Uses of ColorBrewer in org.jcolorbrewer.ui

Fields in org.jcolorbrewer.ui declared as ColorBrewer

Modifier and Type	Field	Description
protected ColorBrewer	ColorPaletteChooserDialog.startingColorBrewer	Starting color, set by setColor, and the color we return to on a reset.

Methods in org.jcolorbrewer.ui that return ColorBrewer

Modifier and Type	Method	Description
ColorBrewer	ColorPanelSelectionModel.getColorBrewer()
ColorBrewer	ColorPaletteChooserDialog.getColorPalette()	Get the current color in the color chooser.

Methods in org.jcolorbrewer.ui with parameters of type ColorBrewer

Modifier and Type	Method	Description
protected javax.swing.JToggleButton	DivergingColorPalettePanel.createPalette(ColorBrewer brewer, javax.swing.border.Border normalBorder)
protected javax.swing.JToggleButton	QualitativeColorPalettePanel.createPalette(ColorBrewer brewer, javax.swing.border.Border normalBorder)
protected javax.swing.JToggleButton	SequentialColorPalettePanel.createPalette(ColorBrewer brewer, javax.swing.border.Border normalBorder)
void	ColorPaletteChooserDialog.setColorBrewer(ColorBrewer brewer)	Set the current color in the color chooser.
void	ColorPanelSelectionModel.setColorBrewer(ColorBrewer brewer)

Constructors in org.jcolorbrewer.ui with parameters of type ColorBrewer

Constructor	Description
PaletteIcon(ColorBrewer brewer, int colorCount, int width, int height)