Package org.forester.ws.wabi

Class TxSearch

  • public final class TxSearch
extends java.lang.Object
    This is to access the Web API for Biology (WABI) at DDBJ. See: http://xml.nig.ac.jp/ Service Description: TXSearch is a retrieval system for a Taxonomy Database which was unified by DDBJ, GenBank and EMBL, which is developed by DDBJ. See: http://xml.nig.ac.jp/wabi/Method?serviceName=TxSearch&mode=methodList

    • Constructor Summary

      Constructors 
      Constructor Description
      TxSearch()  

    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static java.lang.String[] getLineage​(java.lang.String result)  
      static java.lang.String getTaxonomicRank​(java.lang.String result)  
      static java.lang.String getTxId​(java.lang.String tx_name)  
      static java.lang.String getTxName​(java.lang.String tx_id)  
      static void main​(java.lang.String[] args)  
      static java.lang.String searchLineage​(java.util.List<java.lang.String> queries, java.util.List<TxSearch.RANKS> ranks)  
      static java.lang.String searchLineage​(java.util.List<java.lang.String> queries, java.util.List<TxSearch.RANKS> ranks, java.lang.String superkingdom)  
      static java.lang.String searchParam​(java.lang.String tx_name, TxSearch.TAX_NAME_CLASS tx_name_class, TxSearch.TAX_RANK tx_rank, int tx_rmax, boolean as_scientific_name)  
      static java.lang.String searchSimple​(java.lang.String tx_name)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • TxSearch

        public TxSearch()

    • Method Detail

      • getLineage

        public static java.lang.String[] getLineage​(java.lang.String result)
                                     throws java.io.IOException
        Throws:
        java.io.IOException

      • getTaxonomicRank

        public static java.lang.String getTaxonomicRank​(java.lang.String result)
                                         throws java.io.IOException
        Throws:
        java.io.IOException

      • getTxId

        public static java.lang.String getTxId​(java.lang.String tx_name)
                                throws java.io.IOException
        Throws:
        java.io.IOException

      • getTxName

        public static java.lang.String getTxName​(java.lang.String tx_id)
                                  throws java.io.IOException
        Throws:
        java.io.IOException

      • main

        public static void main​(java.lang.String[] args)
                 throws java.io.IOException
        Throws:
        java.io.IOException

      • searchLineage

        public static java.lang.String searchLineage​(java.util.List<java.lang.String> queries,
                                             java.util.List<TxSearch.RANKS> ranks)
                                      throws java.io.IOException
        Throws:
        java.io.IOException

      • searchLineage

        public static java.lang.String searchLineage​(java.util.List<java.lang.String> queries,
                                             java.util.List<TxSearch.RANKS> ranks,
                                             java.lang.String superkingdom)
                                      throws java.io.IOException
        Throws:
        java.io.IOException

      • searchParam

        public static java.lang.String searchParam​(java.lang.String tx_name,
                                           TxSearch.TAX_NAME_CLASS tx_name_class,
                                           TxSearch.TAX_RANK tx_rank,
                                           int tx_rmax,
                                           boolean as_scientific_name)
                                    throws java.io.IOException
        Throws:
        java.io.IOException

      • searchSimple

        public static java.lang.String searchSimple​(java.lang.String tx_name)
                                     throws java.io.IOException
        Throws:
        java.io.IOException