Package org.forester.surfacing

Class DomainLengths

  • public class DomainLengths
extends java.lang.Object

    • Constructor Detail

      • DomainLengths

        public DomainLengths​(java.lang.String domain_id)

    • Method Detail

      • addLength

        public void addLength​(Species species,
                      int domain_length)

      • calculateMeanBasedStatistics

        public DescriptiveStatistics calculateMeanBasedStatistics()
        Returns descriptive statistics based on the arithmetic means for each species.
        Returns:

      • calculateZScoreForSpecies

        public double calculateZScoreForSpecies​(Species species)
        Note. This is not technically a Z-score since the distribution of means is unknown (and not normal).
        Parameters:
        species -
        Returns:

      • getDomainId

        public java.lang.String getDomainId()

      • getMeanBasedOutlierSpecies

        public java.util.List<Species> getMeanBasedOutlierSpecies​(double z_score_limit)

      • getSpeciesList

        public java.util.List<Species> getSpeciesList()

      • isHasLengthStatistic

        public boolean isHasLengthStatistic​(Species species)