MolecularSequence (biojava 5.4.0 API)

All Known Implementing Classes:

BasicSequence
```
public interface MolecularSequence
```

Nested Class Summary

Nested Classes
Modifier and Type Interface Description

static class MolecularSequence.TYPE

Field Summary

Fields
Modifier and Type	Field	Description
`static java.lang.String`	`AA_REGEXP`
`static java.lang.String`	`DNA_REGEXP`
`static char`	`GAP`
`static java.lang.String`	`GAP_STR`
`static java.lang.String`	`RNA_REGEXP`
`static char`	`TERMINATE`
`static char`	`UNSPECIFIED_AA`
`static char`	`UNSPECIFIED_NUC`

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`java.lang.String`	`getIdentifier()`
`int`	`getLength()`
`char[]`	`getMolecularSequence()`
`java.lang.String`	`getMolecularSequenceAsString()`
`int`	`getNumberOfGapResidues()`
`char`	`getResidueAt(int position)`
`MolecularSequence.TYPE`	`getType()`
`boolean`	`isGapAt(int position)`

Field Detail
- UNSPECIFIED_AA
```
static final char UNSPECIFIED_AA
```
  See Also:
  
  Constant Field Values
- UNSPECIFIED_NUC
```
static final char UNSPECIFIED_NUC
```
  See Also:
  
  Constant Field Values
- GAP
```
static final char GAP
```
  See Also:
  
  Constant Field Values
- GAP_STR
```
static final java.lang.String GAP_STR
```
- TERMINATE
```
static final char TERMINATE
```
  See Also:
  
  Constant Field Values
- AA_REGEXP
```
static final java.lang.String AA_REGEXP
```
  See Also:
  
  Constant Field Values
- DNA_REGEXP
```
static final java.lang.String DNA_REGEXP
```
  See Also:
  
  Constant Field Values
- RNA_REGEXP
```
static final java.lang.String RNA_REGEXP
```
  See Also:
  
  Constant Field Values

Method Detail

getIdentifier
```
java.lang.String getIdentifier()
```

getLength
```
int getLength()
```

getNumberOfGapResidues
```
int getNumberOfGapResidues()
```

getMolecularSequence
```
char[] getMolecularSequence()
```

getMolecularSequenceAsString

java.lang.String getMolecularSequenceAsString()

getResidueAt
```
char getResidueAt(int position)
```

isGapAt
```
boolean isGapAt(int position)
```

getType
```
MolecularSequence.TYPE getType()
```