Uses of Class
org.forester.protein.BinaryDomainCombination.OutputFormat

Packages that use BinaryDomainCombination.OutputFormat

Package	Description
org.forester.protein
org.forester.surfacing

Uses of BinaryDomainCombination.OutputFormat in org.forester.protein

Methods in org.forester.protein that return BinaryDomainCombination.OutputFormat

Modifier and Type	Method	Description
static BinaryDomainCombination.OutputFormat	BinaryDomainCombination.OutputFormat.valueOf(java.lang.String name)	Returns the enum constant of this type with the specified name.
static BinaryDomainCombination.OutputFormat[]	BinaryDomainCombination.OutputFormat.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.forester.protein with parameters of type BinaryDomainCombination.OutputFormat

Modifier and Type	Method	Description
java.lang.StringBuffer	BinaryDomainCombination.toGraphDescribingLanguage(BinaryDomainCombination.OutputFormat format, java.lang.String node_attribute, java.lang.String edge_attribute)

Uses of BinaryDomainCombination.OutputFormat in org.forester.surfacing

Methods in org.forester.surfacing with parameters of type BinaryDomainCombination.OutputFormat

Modifier and Type	Method	Description
java.lang.StringBuffer	BasicBinaryDomainCombination.toGraphDescribingLanguage(BinaryDomainCombination.OutputFormat format, java.lang.String node_attribute, java.lang.String edge_attribute)
static void	SurfacingUtil.writeBinaryStatesMatrixAsListToFileForBinaryCombinationsForGraphAnalysis(CharacterStateMatrix<CharacterStateMatrix.GainLossStates> matrix, CharacterStateMatrix.GainLossStates state, java.lang.String filename, java.lang.String indentifier_characters_separator, java.lang.String character_separator, BinaryDomainCombination.OutputFormat bc_output_format)