Package org.forester.io.parsers.phyloxml

Class PhyloXmlUtil

java.lang.Object

org.forester.io.parsers.phyloxml.PhyloXmlUtil

public final class PhyloXmlUtil
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
static java.util.regex.Pattern	LIT_REF_DOI_PATTERN
static java.lang.String	OTHER
static int	ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
static java.lang.String	SEQ_TYPE_DNA
static java.lang.String	SEQ_TYPE_PROTEIN
static java.lang.String	SEQ_TYPE_RNA
static java.util.regex.Pattern	SEQUENCE_SYMBOL_PATTERN
static java.util.Set<java.lang.String>	SEQUENCE_TYPES
static java.util.regex.Pattern	TAXOMONY_CODE_PATTERN
static java.util.List<java.lang.String>	TAXONOMY_RANKS_LIST
static java.util.Set<java.lang.String>	TAXONOMY_RANKS_SET
static java.lang.String	UNIPROT_TAX_PROVIDER
static java.lang.String	UNKNOWN
static java.lang.String	VECTOR_PROPERTY_REF
static java.lang.String	VECTOR_PROPERTY_TYPE

Constructor Summary

Constructors

Constructor	Description
PhyloXmlUtil()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

OTHER

public static final java.lang.String OTHER

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Constant Field Values

UNKNOWN

public static final java.lang.String UNKNOWN

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Constant Field Values

SEQUENCE_SYMBOL_PATTERN

public static final java.util.regex.Pattern SEQUENCE_SYMBOL_PATTERN

TAXOMONY_CODE_PATTERN

public static final java.util.regex.Pattern TAXOMONY_CODE_PATTERN

LIT_REF_DOI_PATTERN

public static final java.util.regex.Pattern LIT_REF_DOI_PATTERN

SEQUENCE_TYPES

public static final java.util.Set<java.lang.String> SEQUENCE_TYPES

TAXONOMY_RANKS_LIST

public static final java.util.List<java.lang.String> TAXONOMY_RANKS_LIST

TAXONOMY_RANKS_SET

public static final java.util.Set<java.lang.String> TAXONOMY_RANKS_SET

ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT

public static final int ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT

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Constant Field Values

VECTOR_PROPERTY_REF

public static final java.lang.String VECTOR_PROPERTY_REF

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Constant Field Values

VECTOR_PROPERTY_TYPE

public static final java.lang.String VECTOR_PROPERTY_TYPE

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Constant Field Values

UNIPROT_TAX_PROVIDER

public static final java.lang.String UNIPROT_TAX_PROVIDER

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Constant Field Values

SEQ_TYPE_RNA

public static final java.lang.String SEQ_TYPE_RNA

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Constant Field Values

SEQ_TYPE_DNA

public static final java.lang.String SEQ_TYPE_DNA

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Constant Field Values

SEQ_TYPE_PROTEIN

public static final java.lang.String SEQ_TYPE_PROTEIN

See Also:

Constant Field Values

Constructor Detail

PhyloXmlUtil

public PhyloXmlUtil()