Package org.biojava.nbio.structure.validation

Class ModelledSubgroup

  • public class ModelledSubgroup
extends java.lang.Object

    Java class for anonymous complex type.

    The following schema fragment specifies the expected content contained within this class. 

     <complexType>
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element ref="{}angle-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}clash" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}bond-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}mog-angle-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <choice>
           <element ref="{}symm-clash" maxOccurs="unbounded" minOccurs="0"/>
           <element ref="{}mog-bond-outlier" maxOccurs="unbounded" minOccurs="0"/>
         </choice>
       </sequence>
       <attribute name="NatomsEDS" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="altcode" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="avgoccu" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="chain" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="ent" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="flippable-sidechain" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="icode" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="ligRSRZ" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnbrMean" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnbrStdev" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnumnbrs" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="model" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="mogul-ignore" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="num-H-reduce" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="owab" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="phi" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="psi" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rama" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="resname" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="resnum" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="rota" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="rscc" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rsr" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rsrz" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="said" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="seq" use="required" type="{http://www.w3.org/2001/XMLSchema}NMTOKEN" />
     </restriction>
   </complexContent>
 </complexType>

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.String getAltcode()
      Gets the value of the altcode property.
      java.util.List<AngleOutlier> getAngleOutlier()
      Gets the value of the angleOutlier property.
      java.math.BigDecimal getAvgoccu()
      Gets the value of the avgoccu property.
      java.util.List<BondOutlier> getBondOutlier()
      Gets the value of the bondOutlier property.
      java.lang.String getChain()
      Gets the value of the chain property.
      java.util.List<Clash> getClash()
      Gets the value of the clash property.
      java.math.BigInteger getEnt()
      Gets the value of the ent property.
      java.math.BigInteger getFlippableSidechain()
      Gets the value of the flippableSidechain property.
      java.lang.String getIcode()
      Gets the value of the icode property.
      java.math.BigDecimal getLigRSRnbrMean()
      Gets the value of the ligRSRnbrMean property.
      java.math.BigDecimal getLigRSRnbrStdev()
      Gets the value of the ligRSRnbrStdev property.
      java.math.BigInteger getLigRSRnumnbrs()
      Gets the value of the ligRSRnumnbrs property.
      java.math.BigDecimal getLigRSRZ()
      Gets the value of the ligRSRZ property.
      java.math.BigInteger getModel()
      Gets the value of the model property.
      java.util.List<MogAngleOutlier> getMogAngleOutlier()
      Gets the value of the mogAngleOutlier property.
      java.util.List<MogBondOutlier> getMogBondOutlier()
      Gets the value of the mogBondOutlier property.
      java.lang.String getMogulIgnore()
      Gets the value of the mogulIgnore property.
      java.math.BigInteger getNatomsEDS()
      Gets the value of the natomsEDS property.
      java.math.BigInteger getNumHReduce()
      Gets the value of the numHReduce property.
      java.math.BigDecimal getOwab()
      Gets the value of the owab property.
      java.math.BigDecimal getPhi()
      Gets the value of the phi property.
      java.math.BigDecimal getPsi()
      Gets the value of the psi property.
      java.lang.String getRama()
      Gets the value of the rama property.
      java.lang.String getResname()
      Gets the value of the resname property.
      java.math.BigInteger getResnum()
      Gets the value of the resnum property.
      java.lang.String getRota()
      Gets the value of the rota property.
      java.math.BigDecimal getRscc()
      Gets the value of the rscc property.
      java.math.BigDecimal getRsr()
      Gets the value of the rsr property.
      java.math.BigDecimal getRsrz()
      Gets the value of the rsrz property.
      java.lang.String getSaid()
      Gets the value of the said property.
      java.lang.String getSeq()
      Gets the value of the seq property.
      java.util.List<SymmClash> getSymmClash()
      Gets the value of the symmClash property.
      void setAltcode​(java.lang.String value)
      Sets the value of the altcode property.
      void setAvgoccu​(java.math.BigDecimal value)
      Sets the value of the avgoccu property.
      void setChain​(java.lang.String value)
      Sets the value of the chain property.
      void setEnt​(java.math.BigInteger value)
      Sets the value of the ent property.
      void setFlippableSidechain​(java.math.BigInteger value)
      Sets the value of the flippableSidechain property.
      void setIcode​(java.lang.String value)
      Sets the value of the icode property.
      void setLigRSRnbrMean​(java.math.BigDecimal value)
      Sets the value of the ligRSRnbrMean property.
      void setLigRSRnbrStdev​(java.math.BigDecimal value)
      Sets the value of the ligRSRnbrStdev property.
      void setLigRSRnumnbrs​(java.math.BigInteger value)
      Sets the value of the ligRSRnumnbrs property.
      void setLigRSRZ​(java.math.BigDecimal value)
      Sets the value of the ligRSRZ property.
      void setModel​(java.math.BigInteger value)
      Sets the value of the model property.
      void setMogulIgnore​(java.lang.String value)
      Sets the value of the mogulIgnore property.
      void setNatomsEDS​(java.math.BigInteger value)
      Sets the value of the natomsEDS property.
      void setNumHReduce​(java.math.BigInteger value)
      Sets the value of the numHReduce property.
      void setOwab​(java.math.BigDecimal value)
      Sets the value of the owab property.
      void setPhi​(java.math.BigDecimal value)
      Sets the value of the phi property.
      void setPsi​(java.math.BigDecimal value)
      Sets the value of the psi property.
      void setRama​(java.lang.String value)
      Sets the value of the rama property.
      void setResname​(java.lang.String value)
      Sets the value of the resname property.
      void setResnum​(java.math.BigInteger value)
      Sets the value of the resnum property.
      void setRota​(java.lang.String value)
      Sets the value of the rota property.
      void setRscc​(java.math.BigDecimal value)
      Sets the value of the rscc property.
      void setRsr​(java.math.BigDecimal value)
      Sets the value of the rsr property.
      void setRsrz​(java.math.BigDecimal value)
      Sets the value of the rsrz property.
      void setSaid​(java.lang.String value)
      Sets the value of the said property.
      void setSeq​(java.lang.String value)
      Sets the value of the seq property.

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • angleOutlier

        protected java.util.List<AngleOutlier> angleOutlier

      • clash

        protected java.util.List<Clash> clash

      • bondOutlier

        protected java.util.List<BondOutlier> bondOutlier

      • mogAngleOutlier

        protected java.util.List<MogAngleOutlier> mogAngleOutlier

      • symmClash

        protected java.util.List<SymmClash> symmClash

      • mogBondOutlier

        protected java.util.List<MogBondOutlier> mogBondOutlier

      • natomsEDS

        protected java.math.BigInteger natomsEDS

      • altcode

        protected java.lang.String altcode

      • avgoccu

        protected java.math.BigDecimal avgoccu

      • chain

        protected java.lang.String chain

      • ent

        protected java.math.BigInteger ent

      • flippableSidechain

        protected java.math.BigInteger flippableSidechain

      • icode

        protected java.lang.String icode

      • ligRSRZ

        protected java.math.BigDecimal ligRSRZ

      • ligRSRnbrMean

        protected java.math.BigDecimal ligRSRnbrMean

      • ligRSRnbrStdev

        protected java.math.BigDecimal ligRSRnbrStdev

      • ligRSRnumnbrs

        protected java.math.BigInteger ligRSRnumnbrs

      • model

        protected java.math.BigInteger model

      • mogulIgnore

        protected java.lang.String mogulIgnore

      • numHReduce

        protected java.math.BigInteger numHReduce

      • owab

        protected java.math.BigDecimal owab

      • phi

        protected java.math.BigDecimal phi

      • psi

        protected java.math.BigDecimal psi

      • rama

        protected java.lang.String rama

      • resname

        protected java.lang.String resname

      • resnum

        protected java.math.BigInteger resnum

      • rota

        protected java.lang.String rota

      • rscc

        protected java.math.BigDecimal rscc

      • rsr

        protected java.math.BigDecimal rsr

      • rsrz

        protected java.math.BigDecimal rsrz

      • said

        protected java.lang.String said

      • seq

        protected java.lang.String seq

    • Constructor Detail

      • ModelledSubgroup

        public ModelledSubgroup()

    • Method Detail

      • getAngleOutlier

        public java.util.List<AngleOutlier> getAngleOutlier()
        Gets the value of the angleOutlier property.

        This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the angleOutlier property.

        For example, to add a new item, do as follows: 

            getAngleOutlier().add(newItem);

        Objects of the following type(s) are allowed in the list AngleOutlier

      • getClash

        public java.util.List<Clash> getClash()
        Gets the value of the clash property.

        This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the clash property.

        For example, to add a new item, do as follows: 

            getClash().add(newItem);

        Objects of the following type(s) are allowed in the list Clash

      • getBondOutlier

        public java.util.List<BondOutlier> getBondOutlier()
        Gets the value of the bondOutlier property.

        This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the bondOutlier property.

        For example, to add a new item, do as follows: 

            getBondOutlier().add(newItem);

        Objects of the following type(s) are allowed in the list BondOutlier

      • getMogAngleOutlier

        public java.util.List<MogAngleOutlier> getMogAngleOutlier()
        Gets the value of the mogAngleOutlier property.

        This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the mogAngleOutlier property.

        For example, to add a new item, do as follows: 

            getMogAngleOutlier().add(newItem);

        Objects of the following type(s) are allowed in the list MogAngleOutlier

      • getSymmClash

        public java.util.List<SymmClash> getSymmClash()
        Gets the value of the symmClash property.

        This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the symmClash property.

        For example, to add a new item, do as follows: 

            getSymmClash().add(newItem);

        Objects of the following type(s) are allowed in the list SymmClash

      • getMogBondOutlier

        public java.util.List<MogBondOutlier> getMogBondOutlier()
        Gets the value of the mogBondOutlier property.

        This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the mogBondOutlier property.

        For example, to add a new item, do as follows: 

            getMogBondOutlier().add(newItem);

        Objects of the following type(s) are allowed in the list MogBondOutlier

      • getNatomsEDS

        public java.math.BigInteger getNatomsEDS()
        Gets the value of the natomsEDS property.
        Returns:
        possible object is BigInteger

      • setNatomsEDS

        public void setNatomsEDS​(java.math.BigInteger value)
        Sets the value of the natomsEDS property.
        Parameters:
        value - allowed object is BigInteger

      • getAltcode

        public java.lang.String getAltcode()
        Gets the value of the altcode property.
        Returns:
        possible object is String

      • setAltcode

        public void setAltcode​(java.lang.String value)
        Sets the value of the altcode property.
        Parameters:
        value - allowed object is String

      • getAvgoccu

        public java.math.BigDecimal getAvgoccu()
        Gets the value of the avgoccu property.
        Returns:
        possible object is BigDecimal

      • setAvgoccu

        public void setAvgoccu​(java.math.BigDecimal value)
        Sets the value of the avgoccu property.
        Parameters:
        value - allowed object is BigDecimal

      • getChain

        public java.lang.String getChain()
        Gets the value of the chain property.
        Returns:
        possible object is String

      • setChain

        public void setChain​(java.lang.String value)
        Sets the value of the chain property.
        Parameters:
        value - allowed object is String

      • getEnt

        public java.math.BigInteger getEnt()
        Gets the value of the ent property.
        Returns:
        possible object is BigInteger

      • setEnt

        public void setEnt​(java.math.BigInteger value)
        Sets the value of the ent property.
        Parameters:
        value - allowed object is BigInteger

      • getFlippableSidechain

        public java.math.BigInteger getFlippableSidechain()
        Gets the value of the flippableSidechain property.
        Returns:
        possible object is BigInteger

      • setFlippableSidechain

        public void setFlippableSidechain​(java.math.BigInteger value)
        Sets the value of the flippableSidechain property.
        Parameters:
        value - allowed object is BigInteger

      • getIcode

        public java.lang.String getIcode()
        Gets the value of the icode property.
        Returns:
        possible object is String

      • setIcode

        public void setIcode​(java.lang.String value)
        Sets the value of the icode property.
        Parameters:
        value - allowed object is String

      • getLigRSRZ

        public java.math.BigDecimal getLigRSRZ()
        Gets the value of the ligRSRZ property.
        Returns:
        possible object is BigDecimal

      • setLigRSRZ

        public void setLigRSRZ​(java.math.BigDecimal value)
        Sets the value of the ligRSRZ property.
        Parameters:
        value - allowed object is BigDecimal

      • getLigRSRnbrMean

        public java.math.BigDecimal getLigRSRnbrMean()
        Gets the value of the ligRSRnbrMean property.
        Returns:
        possible object is BigDecimal

      • setLigRSRnbrMean

        public void setLigRSRnbrMean​(java.math.BigDecimal value)
        Sets the value of the ligRSRnbrMean property.
        Parameters:
        value - allowed object is BigDecimal

      • getLigRSRnbrStdev

        public java.math.BigDecimal getLigRSRnbrStdev()
        Gets the value of the ligRSRnbrStdev property.
        Returns:
        possible object is BigDecimal

      • setLigRSRnbrStdev

        public void setLigRSRnbrStdev​(java.math.BigDecimal value)
        Sets the value of the ligRSRnbrStdev property.
        Parameters:
        value - allowed object is BigDecimal

      • getLigRSRnumnbrs

        public java.math.BigInteger getLigRSRnumnbrs()
        Gets the value of the ligRSRnumnbrs property.
        Returns:
        possible object is BigInteger

      • setLigRSRnumnbrs

        public void setLigRSRnumnbrs​(java.math.BigInteger value)
        Sets the value of the ligRSRnumnbrs property.
        Parameters:
        value - allowed object is BigInteger

      • getModel

        public java.math.BigInteger getModel()
        Gets the value of the model property.
        Returns:
        possible object is BigInteger

      • setModel

        public void setModel​(java.math.BigInteger value)
        Sets the value of the model property.
        Parameters:
        value - allowed object is BigInteger

      • getMogulIgnore

        public java.lang.String getMogulIgnore()
        Gets the value of the mogulIgnore property.
        Returns:
        possible object is String

      • setMogulIgnore

        public void setMogulIgnore​(java.lang.String value)
        Sets the value of the mogulIgnore property.
        Parameters:
        value - allowed object is String

      • getNumHReduce

        public java.math.BigInteger getNumHReduce()
        Gets the value of the numHReduce property.
        Returns:
        possible object is BigInteger

      • setNumHReduce

        public void setNumHReduce​(java.math.BigInteger value)
        Sets the value of the numHReduce property.
        Parameters:
        value - allowed object is BigInteger

      • getOwab

        public java.math.BigDecimal getOwab()
        Gets the value of the owab property.
        Returns:
        possible object is BigDecimal

      • setOwab

        public void setOwab​(java.math.BigDecimal value)
        Sets the value of the owab property.
        Parameters:
        value - allowed object is BigDecimal

      • getPhi

        public java.math.BigDecimal getPhi()
        Gets the value of the phi property.
        Returns:
        possible object is BigDecimal

      • setPhi

        public void setPhi​(java.math.BigDecimal value)
        Sets the value of the phi property.
        Parameters:
        value - allowed object is BigDecimal

      • getPsi

        public java.math.BigDecimal getPsi()
        Gets the value of the psi property.
        Returns:
        possible object is BigDecimal

      • setPsi

        public void setPsi​(java.math.BigDecimal value)
        Sets the value of the psi property.
        Parameters:
        value - allowed object is BigDecimal

      • getRama

        public java.lang.String getRama()
        Gets the value of the rama property.
        Returns:
        possible object is String

      • setRama

        public void setRama​(java.lang.String value)
        Sets the value of the rama property.
        Parameters:
        value - allowed object is String

      • getResname

        public java.lang.String getResname()
        Gets the value of the resname property.
        Returns:
        possible object is String

      • setResname

        public void setResname​(java.lang.String value)
        Sets the value of the resname property.
        Parameters:
        value - allowed object is String

      • getResnum

        public java.math.BigInteger getResnum()
        Gets the value of the resnum property.
        Returns:
        possible object is BigInteger

      • setResnum

        public void setResnum​(java.math.BigInteger value)
        Sets the value of the resnum property.
        Parameters:
        value - allowed object is BigInteger

      • getRota

        public java.lang.String getRota()
        Gets the value of the rota property.
        Returns:
        possible object is String

      • setRota

        public void setRota​(java.lang.String value)
        Sets the value of the rota property.
        Parameters:
        value - allowed object is String

      • getRscc

        public java.math.BigDecimal getRscc()
        Gets the value of the rscc property.
        Returns:
        possible object is BigDecimal

      • setRscc

        public void setRscc​(java.math.BigDecimal value)
        Sets the value of the rscc property.
        Parameters:
        value - allowed object is BigDecimal

      • getRsr

        public java.math.BigDecimal getRsr()
        Gets the value of the rsr property.
        Returns:
        possible object is BigDecimal

      • setRsr

        public void setRsr​(java.math.BigDecimal value)
        Sets the value of the rsr property.
        Parameters:
        value - allowed object is BigDecimal

      • getRsrz

        public java.math.BigDecimal getRsrz()
        Gets the value of the rsrz property.
        Returns:
        possible object is BigDecimal

      • setRsrz

        public void setRsrz​(java.math.BigDecimal value)
        Sets the value of the rsrz property.
        Parameters:
        value - allowed object is BigDecimal

      • getSaid

        public java.lang.String getSaid()
        Gets the value of the said property.
        Returns:
        possible object is String

      • setSaid

        public void setSaid​(java.lang.String value)
        Sets the value of the said property.
        Parameters:
        value - allowed object is String

      • getSeq

        public java.lang.String getSeq()
        Gets the value of the seq property.
        Returns:
        possible object is String

      • setSeq

        public void setSeq​(java.lang.String value)
        Sets the value of the seq property.
        Parameters:
        value - allowed object is String