Uses of Class
org.biojava.nbio.structure.quaternary.BioAssemblyInfo

Packages that use BioAssemblyInfo

Package	Description
org.biojava.nbio.structure
org.biojava.nbio.structure.io	Input and Output of Structures
org.biojava.nbio.structure.io.mmtf

Uses of BioAssemblyInfo in org.biojava.nbio.structure

Methods in org.biojava.nbio.structure that return types with arguments of type BioAssemblyInfo

Modifier and Type	Method	Description
java.util.Map<java.lang.Integer,BioAssemblyInfo>	PDBHeader.getBioAssemblies()	Return the map of biological assemblies.

Method parameters in org.biojava.nbio.structure with type arguments of type BioAssemblyInfo

Modifier and Type	Method	Description
void	PDBHeader.setBioAssemblies(java.util.Map<java.lang.Integer,BioAssemblyInfo> bioAssemblies)

Uses of BioAssemblyInfo in org.biojava.nbio.structure.io

Methods in org.biojava.nbio.structure.io that return types with arguments of type BioAssemblyInfo

Modifier and Type	Method	Description
java.util.Map<java.lang.Integer,BioAssemblyInfo>	PDBBioAssemblyParser.getTransformationMap()	Returns a map of bioassembly transformations

Uses of BioAssemblyInfo in org.biojava.nbio.structure.io.mmtf

Methods in org.biojava.nbio.structure.io.mmtf with parameters of type BioAssemblyInfo

Modifier and Type	Method	Description
static java.util.Map<double[],int[]>	MmtfUtils.getTransformMap(BioAssemblyInfo bioassemblyInfo, java.util.Map<java.lang.String,java.lang.Integer> chainIdToIndexMap)	Convert a bioassembly information into a map of transform, chainindices it relates to.