Package org.biojava.nbio.phosphosite

Class Dataset

java.lang.Object

org.biojava.nbio.phosphosite.Dataset

public class Dataset
extends java.lang.Object

Phosphosite is available under the PhosphoSitePlus® is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License and is freely available for non-commercial purposes from http://www.phosphosite.org/staticDownloads.do Please acknowledge PhosphoSitePlus®, www.phosphosite.org" at appropriate locations. Please cite : “Hornbeck PV, Kornhauser JM, Tkachev S, Zhang B, Skrzypek E, Murray B, Latham V, Sullivan M (2012) PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res. 40(Database issue), D261–70.”. Created by ap3 on 31/10/2014.

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	ACETYLATION
static java.lang.String	DISEASE_ASSOC
static java.lang.String	METHYLATION
static java.lang.String	PHOSPHORYLATION
static java.lang.String	REGULATORY
static java.lang.String	SUMOYLATION
static java.lang.String	UBIQUITINATION

Constructor Summary

Constructors

Constructor	Description
Dataset()

Method Summary

Modifier and Type	Method	Description
static void	copyFile(java.io.File src, java.io.File dst)
void	download()
void	downloadFile(java.net.URL u, java.io.File localFile)
java.io.File	getLocalDir()
java.io.File[]	getLocalFiles()
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ACETYLATION

public static final java.lang.String ACETYLATION

See Also:

Constant Field Values

DISEASE_ASSOC

public static final java.lang.String DISEASE_ASSOC

See Also:

Constant Field Values

METHYLATION

public static final java.lang.String METHYLATION

See Also:

Constant Field Values

PHOSPHORYLATION

public static final java.lang.String PHOSPHORYLATION

See Also:

Constant Field Values

REGULATORY

public static final java.lang.String REGULATORY

See Also:

Constant Field Values

SUMOYLATION

public static final java.lang.String SUMOYLATION

See Also:

Constant Field Values

UBIQUITINATION

public static final java.lang.String UBIQUITINATION

See Also:

Constant Field Values

Constructor Detail

Dataset

public Dataset()

Method Detail

getLocalFiles

public java.io.File[] getLocalFiles()

getLocalDir

public java.io.File getLocalDir()

download

public void download()

downloadFile

public void downloadFile(java.net.URL u,
                         java.io.File localFile)
                  throws java.io.IOException

Throws:

java.io.IOException

copyFile

public static void copyFile(java.io.File src,
                            java.io.File dst)
                     throws java.io.IOException

Throws:

java.io.IOException

main

public static void main(java.lang.String[] args)