java.lang.Object
- org.forester.phylogeny.data.Confidence

All Implemented Interfaces:: java.lang.Comparable<Confidence>, PhylogenyData

public class Confidence
extends java.lang.Object
implements PhylogenyData, java.lang.Comparable<Confidence>

Field Summary

Fields
Modifier and Type Field Description

static int CONFIDENCE_DEFAULT_VALUE

static java.text.NumberFormat FORMATTER

Constructor Summary

Constructors
Constructor	Description
`Confidence()`
`Confidence(double value, java.lang.String type)`
`Confidence(double value, java.lang.String type, double sd)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.lang.StringBuffer`	`asSimpleText()`
`java.lang.StringBuffer`	`asText()`
`int`	`compareTo(Confidence confidence)`
`PhylogenyData`	`copy()`	Creates a new PhylogenyData object with identical values as this PhylogenyData.
`double`	`getStandardDeviation()`
`java.lang.String`	`getType()`
`double`	`getValue()`
`void`	`init()`
`boolean`	`isEqual(PhylogenyData confidence)`	Compares this PhylogenyData to PhylogenyData data.
`void`	`setStandardDeviation(double sd)`
`void`	`setType(java.lang.String type)`
`void`	`setValue(double value)`
`java.lang.StringBuffer`	`toNHX()`
`void`	`toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation)`	Writes a phyloXML representation of this phylogeny data.
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - CONFIDENCE_DEFAULT_VALUE
```
public static final int CONFIDENCE_DEFAULT_VALUE
```
    See Also:
    
    Constant Field Values
  - FORMATTER
```
public static final java.text.NumberFormat FORMATTER
```
- Constructor Detail
  - Confidence
```
public Confidence()
```
  - Confidence
```
public Confidence(double value,
                  java.lang.String type)
```
  - Confidence
```
public Confidence(double value,
                  java.lang.String type,
                  double sd)
```
- Method Detail
  - asSimpleText
```
public java.lang.StringBuffer asSimpleText()
```
    Specified by:
    
    asSimpleText in interface PhylogenyData
  - asText
```
public java.lang.StringBuffer asText()
```
    Specified by:
    
    asText in interface PhylogenyData
  - compareTo
```
public int compareTo(Confidence confidence)
```
    Specified by:
    
    compareTo in interface java.lang.Comparable<Confidence>
  - copy
```
public PhylogenyData copy()
```
    Description copied from interface: PhylogenyData
    
    Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.
    
    Specified by:
    
    copy in interface PhylogenyData
    
    Returns:
    
    a ~deep~ copy of this PhylogenyData
  - getType
```
public java.lang.String getType()
```
  - getValue
```
public double getValue()
```
  - getStandardDeviation
```
public double getStandardDeviation()
```
  - init
```
public void init()
```
  - isEqual
```
public boolean isEqual(PhylogenyData confidence)
```
    Description copied from interface: PhylogenyData
    
    Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.
    
    Specified by:
    
    isEqual in interface PhylogenyData
    
    Returns:
    
    in general, true if and only if all fiels are exactly identical, false otherwise
  - setType
```
public void setType(java.lang.String type)
```
  - setValue
```
public void setValue(double value)
```
  - setStandardDeviation
```
public void setStandardDeviation(double sd)
```
  - toNHX
```
public java.lang.StringBuffer toNHX()
```
    Specified by:
    
    toNHX in interface PhylogenyData
  - toPhyloXML
```
public void toPhyloXML(java.io.Writer writer,
                       int level,
                       java.lang.String indentation)
                throws java.io.IOException
```
    Description copied from interface: PhylogenyData
    
    Writes a phyloXML representation of this phylogeny data.
    
    Specified by:
    
    toPhyloXML in interface PhylogenyData
    
    Throws:
    
    java.io.IOException
  - toString
```
public java.lang.String toString()
```
    Overrides:
    
    toString in class java.lang.Object

Modifier and Type	Field	Description
`static int`	`CONFIDENCE_DEFAULT_VALUE`
`static java.text.NumberFormat`	`FORMATTER`

Class Confidence

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

CONFIDENCE_DEFAULT_VALUE

FORMATTER

Constructor Detail

Confidence

Confidence

Confidence

Method Detail

asSimpleText

asText

compareTo

copy

getType

getValue

getStandardDeviation

init

isEqual

setType

setValue

setStandardDeviation

toNHX

toPhyloXML

toString