Package org.forester.phylogeny.data

Class BranchWidth

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.StringBuffer asSimpleText()  
      java.lang.StringBuffer asText()  
      PhylogenyData copy()
      Creates a new PhylogenyData object with identical values as this PhylogenyData.
      double getValue()  
      boolean isEqual​(PhylogenyData data)
      Compares this PhylogenyData to PhylogenyData data.
      java.lang.StringBuffer toNHX()  
      void toPhyloXML​(java.io.Writer w, int level, java.lang.String indentation)
      Writes a phyloXML representation of this phylogeny data.
      java.lang.String toString()  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • BRANCH_WIDTH_DEFAULT_VALUE

        public static final double BRANCH_WIDTH_DEFAULT_VALUE
        See Also:
        Constant Field Values

    • Constructor Detail

      • BranchWidth

        public BranchWidth()

      • BranchWidth

        public BranchWidth​(double value)

    • Method Detail

      • asText

        public java.lang.StringBuffer asText()
        Specified by:
        asText in interface PhylogenyData

      • copy

        public PhylogenyData copy()
        Description copied from interface: PhylogenyData
        Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.
        Specified by:
        copy in interface PhylogenyData
        Returns:
        a ~deep~ copy of this PhylogenyData

      • getValue

        public double getValue()

      • isEqual

        public boolean isEqual​(PhylogenyData data)
        Description copied from interface: PhylogenyData
        Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.
        Specified by:
        isEqual in interface PhylogenyData
        Returns:
        in general, true if and only if all fiels are exactly identical, false otherwise

      • toNHX

        public java.lang.StringBuffer toNHX()
        Specified by:
        toNHX in interface PhylogenyData

      • toPhyloXML

        public void toPhyloXML​(java.io.Writer w,
                       int level,
                       java.lang.String indentation)
                throws java.io.IOException
        Description copied from interface: PhylogenyData
        Writes a phyloXML representation of this phylogeny data.
        Specified by:
        toPhyloXML in interface PhylogenyData
        Throws:
        java.io.IOException

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object