Package org.forester.io.parsers.phyloxml
Class PhyloXmlMapping
- java.lang.Object
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- org.forester.io.parsers.phyloxml.PhyloXmlMapping
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public final class PhyloXmlMapping extends java.lang.Object
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Field Summary
Fields Modifier and Type Field Description static java.lang.StringACCESSIONstatic java.lang.StringACCESSION_COMMENT_ATTRstatic java.lang.StringACCESSION_SOURCE_ATTRstatic java.lang.StringANNOTATIONstatic java.lang.StringANNOTATION_DESCstatic java.lang.StringANNOTATION_EVIDENCE_ATTRstatic java.lang.StringANNOTATION_REF_ATTRstatic java.lang.StringANNOTATION_SOURCE_ATTRstatic java.lang.StringANNOTATION_TYPE_ATTRstatic java.lang.StringBINARY_CHARACTERstatic java.lang.StringBINARY_CHARACTERSstatic java.lang.StringBINARY_CHARACTERS_GAINEDstatic java.lang.StringBINARY_CHARACTERS_GAINED_COUNT_ATTRstatic java.lang.StringBINARY_CHARACTERS_LOSTstatic java.lang.StringBINARY_CHARACTERS_LOST_COUNT_ATTRstatic java.lang.StringBINARY_CHARACTERS_PRESENTstatic java.lang.StringBINARY_CHARACTERS_PRESENT_COUNT_ATTRstatic java.lang.StringBINARY_CHARACTERS_TYPE_ATTRstatic java.lang.StringBRANCH_LENGTHstatic java.lang.StringCLADEstatic java.lang.StringCLADE_DATEstatic java.lang.StringCLADE_DATE_DESCstatic java.lang.StringCLADE_DATE_MAXstatic java.lang.StringCLADE_DATE_MINstatic java.lang.StringCLADE_DATE_UNITstatic java.lang.StringCLADE_DATE_VALUEstatic java.lang.StringCOLORstatic java.lang.StringCOLOR_BLUEstatic java.lang.StringCOLOR_GREENstatic java.lang.StringCOLOR_REDstatic java.lang.StringCONFIDENCEstatic java.lang.StringCONFIDENCE_SD_ATTRstatic java.lang.StringCONFIDENCE_TYPE_ATTRstatic java.lang.StringDISTRIBUTIONstatic java.lang.StringDISTRIBUTION_DESCstatic java.lang.StringEVENT_DUPLICATIONSstatic java.lang.StringEVENT_LOSSESstatic java.lang.StringEVENT_SPECIATIONSstatic java.lang.StringEVENT_TYPEstatic java.lang.StringEVENTSstatic java.lang.StringID_REFstatic java.lang.StringIDENTIFIERstatic java.lang.StringIDENTIFIER_PROVIDER_ATTRstatic java.lang.StringNODE_COLLAPSEstatic java.lang.StringNODE_NAMEstatic java.lang.StringPHYLOGENYstatic java.lang.StringPHYLOGENY_BRANCHLENGTH_UNIT_ATTRstatic java.lang.StringPHYLOGENY_DESCRIPTIONstatic java.lang.StringPHYLOGENY_IS_REROOTABLE_ATTRstatic java.lang.StringPHYLOGENY_IS_ROOTED_ATTRstatic java.lang.StringPHYLOGENY_NAMEstatic java.lang.StringPHYLOGENY_TYPE_ATTRstatic java.lang.StringPOINTstatic java.lang.StringPOINT_ALTITUDEstatic java.lang.StringPOINT_ALTITUDE_UNIT_ATTRstatic java.lang.StringPOINT_GEODETIC_DATUMstatic java.lang.StringPOINT_LATITUDEstatic java.lang.StringPOINT_LONGITUDEstatic java.lang.StringPOLYGONstatic java.lang.StringPROPERTYstatic java.lang.StringPROPERTY_APPLIES_TOstatic java.lang.StringPROPERTY_DATATYPEstatic java.lang.StringPROPERTY_REFstatic java.lang.StringPROPERTY_UNITstatic java.lang.StringREFERENCEstatic java.lang.StringREFERENCE_DESCstatic java.lang.StringREFERENCE_DOI_ATTRstatic java.lang.StringSEQUENCEstatic java.lang.StringSEQUENCE_DOMAIN_ARCHITECTURE_DOMAINstatic java.lang.StringSEQUENCE_DOMAIN_ARCHITECTURE_LENGTHstatic java.lang.StringSEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCEstatic java.lang.StringSEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROMstatic java.lang.StringSEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TOstatic java.lang.StringSEQUENCE_DOMAIN_ARCHITECUREstatic java.lang.StringSEQUENCE_GENE_NAMEstatic java.lang.StringSEQUENCE_LOCATIONstatic java.lang.StringSEQUENCE_MOL_SEQstatic java.lang.StringSEQUENCE_MOL_SEQ_ALIGNED_ATTRstatic java.lang.StringSEQUENCE_NAMEstatic java.lang.StringSEQUENCE_RELATIONstatic java.lang.StringSEQUENCE_RELATION_DISTANCEstatic java.lang.StringSEQUENCE_RELATION_ID_REF0static java.lang.StringSEQUENCE_RELATION_ID_REF1static java.lang.StringSEQUENCE_RELATION_TYPEstatic java.lang.StringSEQUENCE_SOURCE_IDstatic java.lang.StringSEQUENCE_SYMBOLstatic java.lang.StringSEQUENCE_TYPEstatic java.lang.StringSEQUENCE_X_REFSstatic java.lang.StringTAXONOMYstatic java.lang.StringTAXONOMY_AUTHORITYstatic java.lang.StringTAXONOMY_CODEstatic java.lang.StringTAXONOMY_COMMON_NAMEstatic java.lang.StringTAXONOMY_RANKstatic java.lang.StringTAXONOMY_SCIENTIFIC_NAMEstatic java.lang.StringTAXONOMY_SYNONYMstatic java.lang.StringTYPE_ATTRstatic java.lang.StringURIstatic java.lang.StringURI_DESC_ATTRstatic java.lang.StringWIDTH
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Field Detail
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ACCESSION
public static final java.lang.String ACCESSION
- See Also:
- Constant Field Values
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ACCESSION_COMMENT_ATTR
public static final java.lang.String ACCESSION_COMMENT_ATTR
- See Also:
- Constant Field Values
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ACCESSION_SOURCE_ATTR
public static final java.lang.String ACCESSION_SOURCE_ATTR
- See Also:
- Constant Field Values
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ANNOTATION
public static final java.lang.String ANNOTATION
- See Also:
- Constant Field Values
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ANNOTATION_DESC
public static final java.lang.String ANNOTATION_DESC
- See Also:
- Constant Field Values
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ANNOTATION_EVIDENCE_ATTR
public static final java.lang.String ANNOTATION_EVIDENCE_ATTR
- See Also:
- Constant Field Values
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ANNOTATION_REF_ATTR
public static final java.lang.String ANNOTATION_REF_ATTR
- See Also:
- Constant Field Values
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ANNOTATION_SOURCE_ATTR
public static final java.lang.String ANNOTATION_SOURCE_ATTR
- See Also:
- Constant Field Values
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ANNOTATION_TYPE_ATTR
public static final java.lang.String ANNOTATION_TYPE_ATTR
- See Also:
- Constant Field Values
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BINARY_CHARACTER
public static final java.lang.String BINARY_CHARACTER
- See Also:
- Constant Field Values
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BINARY_CHARACTERS
public static final java.lang.String BINARY_CHARACTERS
- See Also:
- Constant Field Values
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BINARY_CHARACTERS_GAINED
public static final java.lang.String BINARY_CHARACTERS_GAINED
- See Also:
- Constant Field Values
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BINARY_CHARACTERS_GAINED_COUNT_ATTR
public static final java.lang.String BINARY_CHARACTERS_GAINED_COUNT_ATTR
- See Also:
- Constant Field Values
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BINARY_CHARACTERS_LOST
public static final java.lang.String BINARY_CHARACTERS_LOST
- See Also:
- Constant Field Values
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BINARY_CHARACTERS_LOST_COUNT_ATTR
public static final java.lang.String BINARY_CHARACTERS_LOST_COUNT_ATTR
- See Also:
- Constant Field Values
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BINARY_CHARACTERS_PRESENT
public static final java.lang.String BINARY_CHARACTERS_PRESENT
- See Also:
- Constant Field Values
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BINARY_CHARACTERS_PRESENT_COUNT_ATTR
public static final java.lang.String BINARY_CHARACTERS_PRESENT_COUNT_ATTR
- See Also:
- Constant Field Values
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BINARY_CHARACTERS_TYPE_ATTR
public static final java.lang.String BINARY_CHARACTERS_TYPE_ATTR
- See Also:
- Constant Field Values
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BRANCH_LENGTH
public static final java.lang.String BRANCH_LENGTH
- See Also:
- Constant Field Values
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CLADE
public static final java.lang.String CLADE
- See Also:
- Constant Field Values
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CLADE_DATE
public static final java.lang.String CLADE_DATE
- See Also:
- Constant Field Values
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CLADE_DATE_DESC
public static final java.lang.String CLADE_DATE_DESC
- See Also:
- Constant Field Values
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CLADE_DATE_MAX
public static final java.lang.String CLADE_DATE_MAX
- See Also:
- Constant Field Values
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CLADE_DATE_MIN
public static final java.lang.String CLADE_DATE_MIN
- See Also:
- Constant Field Values
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CLADE_DATE_UNIT
public static final java.lang.String CLADE_DATE_UNIT
- See Also:
- Constant Field Values
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CLADE_DATE_VALUE
public static final java.lang.String CLADE_DATE_VALUE
- See Also:
- Constant Field Values
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COLOR
public static final java.lang.String COLOR
- See Also:
- Constant Field Values
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COLOR_BLUE
public static final java.lang.String COLOR_BLUE
- See Also:
- Constant Field Values
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COLOR_GREEN
public static final java.lang.String COLOR_GREEN
- See Also:
- Constant Field Values
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COLOR_RED
public static final java.lang.String COLOR_RED
- See Also:
- Constant Field Values
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CONFIDENCE
public static final java.lang.String CONFIDENCE
- See Also:
- Constant Field Values
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CONFIDENCE_SD_ATTR
public static final java.lang.String CONFIDENCE_SD_ATTR
- See Also:
- Constant Field Values
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CONFIDENCE_TYPE_ATTR
public static final java.lang.String CONFIDENCE_TYPE_ATTR
- See Also:
- Constant Field Values
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DISTRIBUTION
public static final java.lang.String DISTRIBUTION
- See Also:
- Constant Field Values
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DISTRIBUTION_DESC
public static final java.lang.String DISTRIBUTION_DESC
- See Also:
- Constant Field Values
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EVENT_DUPLICATIONS
public static final java.lang.String EVENT_DUPLICATIONS
- See Also:
- Constant Field Values
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EVENT_LOSSES
public static final java.lang.String EVENT_LOSSES
- See Also:
- Constant Field Values
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EVENT_SPECIATIONS
public static final java.lang.String EVENT_SPECIATIONS
- See Also:
- Constant Field Values
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EVENT_TYPE
public static final java.lang.String EVENT_TYPE
- See Also:
- Constant Field Values
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EVENTS
public static final java.lang.String EVENTS
- See Also:
- Constant Field Values
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ID_REF
public static final java.lang.String ID_REF
- See Also:
- Constant Field Values
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IDENTIFIER
public static final java.lang.String IDENTIFIER
- See Also:
- Constant Field Values
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IDENTIFIER_PROVIDER_ATTR
public static final java.lang.String IDENTIFIER_PROVIDER_ATTR
- See Also:
- Constant Field Values
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NODE_COLLAPSE
public static final java.lang.String NODE_COLLAPSE
- See Also:
- Constant Field Values
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NODE_NAME
public static final java.lang.String NODE_NAME
- See Also:
- Constant Field Values
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PHYLOGENY
public static final java.lang.String PHYLOGENY
- See Also:
- Constant Field Values
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PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
public static final java.lang.String PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
- See Also:
- Constant Field Values
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PHYLOGENY_DESCRIPTION
public static final java.lang.String PHYLOGENY_DESCRIPTION
- See Also:
- Constant Field Values
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PHYLOGENY_IS_REROOTABLE_ATTR
public static final java.lang.String PHYLOGENY_IS_REROOTABLE_ATTR
- See Also:
- Constant Field Values
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PHYLOGENY_IS_ROOTED_ATTR
public static final java.lang.String PHYLOGENY_IS_ROOTED_ATTR
- See Also:
- Constant Field Values
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PHYLOGENY_NAME
public static final java.lang.String PHYLOGENY_NAME
- See Also:
- Constant Field Values
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PHYLOGENY_TYPE_ATTR
public static final java.lang.String PHYLOGENY_TYPE_ATTR
- See Also:
- Constant Field Values
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POINT
public static final java.lang.String POINT
- See Also:
- Constant Field Values
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POINT_ALTITUDE
public static final java.lang.String POINT_ALTITUDE
- See Also:
- Constant Field Values
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POINT_ALTITUDE_UNIT_ATTR
public static final java.lang.String POINT_ALTITUDE_UNIT_ATTR
- See Also:
- Constant Field Values
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POINT_GEODETIC_DATUM
public static final java.lang.String POINT_GEODETIC_DATUM
- See Also:
- Constant Field Values
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POINT_LATITUDE
public static final java.lang.String POINT_LATITUDE
- See Also:
- Constant Field Values
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POINT_LONGITUDE
public static final java.lang.String POINT_LONGITUDE
- See Also:
- Constant Field Values
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POLYGON
public static final java.lang.String POLYGON
- See Also:
- Constant Field Values
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PROPERTY
public static final java.lang.String PROPERTY
- See Also:
- Constant Field Values
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PROPERTY_APPLIES_TO
public static final java.lang.String PROPERTY_APPLIES_TO
- See Also:
- Constant Field Values
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PROPERTY_DATATYPE
public static final java.lang.String PROPERTY_DATATYPE
- See Also:
- Constant Field Values
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PROPERTY_REF
public static final java.lang.String PROPERTY_REF
- See Also:
- Constant Field Values
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PROPERTY_UNIT
public static final java.lang.String PROPERTY_UNIT
- See Also:
- Constant Field Values
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REFERENCE
public static final java.lang.String REFERENCE
- See Also:
- Constant Field Values
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REFERENCE_DESC
public static final java.lang.String REFERENCE_DESC
- See Also:
- Constant Field Values
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REFERENCE_DOI_ATTR
public static final java.lang.String REFERENCE_DOI_ATTR
- See Also:
- Constant Field Values
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SEQUENCE
public static final java.lang.String SEQUENCE
- See Also:
- Constant Field Values
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SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
- See Also:
- Constant Field Values
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SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
- See Also:
- Constant Field Values
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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
- See Also:
- Constant Field Values
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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
- See Also:
- Constant Field Values
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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
- See Also:
- Constant Field Values
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SEQUENCE_DOMAIN_ARCHITECURE
public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECURE
- See Also:
- Constant Field Values
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SEQUENCE_GENE_NAME
public static final java.lang.String SEQUENCE_GENE_NAME
- See Also:
- Constant Field Values
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SEQUENCE_LOCATION
public static final java.lang.String SEQUENCE_LOCATION
- See Also:
- Constant Field Values
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SEQUENCE_MOL_SEQ
public static final java.lang.String SEQUENCE_MOL_SEQ
- See Also:
- Constant Field Values
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SEQUENCE_MOL_SEQ_ALIGNED_ATTR
public static final java.lang.String SEQUENCE_MOL_SEQ_ALIGNED_ATTR
- See Also:
- Constant Field Values
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SEQUENCE_NAME
public static final java.lang.String SEQUENCE_NAME
- See Also:
- Constant Field Values
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SEQUENCE_RELATION
public static final java.lang.String SEQUENCE_RELATION
- See Also:
- Constant Field Values
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SEQUENCE_RELATION_DISTANCE
public static final java.lang.String SEQUENCE_RELATION_DISTANCE
- See Also:
- Constant Field Values
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SEQUENCE_RELATION_ID_REF0
public static final java.lang.String SEQUENCE_RELATION_ID_REF0
- See Also:
- Constant Field Values
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SEQUENCE_RELATION_ID_REF1
public static final java.lang.String SEQUENCE_RELATION_ID_REF1
- See Also:
- Constant Field Values
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SEQUENCE_RELATION_TYPE
public static final java.lang.String SEQUENCE_RELATION_TYPE
- See Also:
- Constant Field Values
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SEQUENCE_SOURCE_ID
public static final java.lang.String SEQUENCE_SOURCE_ID
- See Also:
- Constant Field Values
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SEQUENCE_SYMBOL
public static final java.lang.String SEQUENCE_SYMBOL
- See Also:
- Constant Field Values
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SEQUENCE_TYPE
public static final java.lang.String SEQUENCE_TYPE
- See Also:
- Constant Field Values
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SEQUENCE_X_REFS
public static final java.lang.String SEQUENCE_X_REFS
- See Also:
- Constant Field Values
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TAXONOMY
public static final java.lang.String TAXONOMY
- See Also:
- Constant Field Values
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TAXONOMY_AUTHORITY
public static final java.lang.String TAXONOMY_AUTHORITY
- See Also:
- Constant Field Values
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TAXONOMY_CODE
public static final java.lang.String TAXONOMY_CODE
- See Also:
- Constant Field Values
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TAXONOMY_COMMON_NAME
public static final java.lang.String TAXONOMY_COMMON_NAME
- See Also:
- Constant Field Values
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TAXONOMY_RANK
public static final java.lang.String TAXONOMY_RANK
- See Also:
- Constant Field Values
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TAXONOMY_SCIENTIFIC_NAME
public static final java.lang.String TAXONOMY_SCIENTIFIC_NAME
- See Also:
- Constant Field Values
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TAXONOMY_SYNONYM
public static final java.lang.String TAXONOMY_SYNONYM
- See Also:
- Constant Field Values
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TYPE_ATTR
public static final java.lang.String TYPE_ATTR
- See Also:
- Constant Field Values
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URI
public static final java.lang.String URI
- See Also:
- Constant Field Values
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URI_DESC_ATTR
public static final java.lang.String URI_DESC_ATTR
- See Also:
- Constant Field Values
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WIDTH
public static final java.lang.String WIDTH
- See Also:
- Constant Field Values
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